| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,185,992 | Δ18 bp | coding (644‑661/4224 nt) | rpoC → | RNA polymerase, beta prime subunit |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4185992 | 4186009 | 18 | 62 [0] | [0] 62 | rpoC | RNA polymerase, beta prime subunit |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4185991 | 0 (0.000) | 56 (0.910) | 48/274 | 0.3 | 100% | coding (643/4224 nt) | rpoC | RNA polymerase, beta prime subunit |
| ? | NC_000913 | 4186010 = | 0 (0.000) | coding (662/4224 nt) | rpoC | RNA polymerase, beta prime subunit | |||||
TCTGGACGCGCTGGAAGAGTTCGGTGACGAATTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCGTTCTGCCGGTACTGCCGCCAGATCTGCGTCCGCTGGTTCCGCTGGATGGTGGTCGTTTCGCGACTTCTG > NC_000913/4185843‑4186138 | tCTGGACGCGCTGGAAGAGTTCGGTGACGAATTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTA > 1:890541‑M1/1‑149 (MQ=255) cTGGACGCGCTGGAAGAGTTCGGTGACGAATTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCCACTCCGAAACCAAGCGTAt > 2:111113‑M1/1‑148 (MQ=255) cTGGACGCGCTGGAAGAGTTCGGTGACGAATTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAt > 2:110924‑M1/1‑148 (MQ=255) gcTGGAAGAGTTCGGTGACGAATTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgc > 1:154507‑M1/1‑140 (MQ=255) cTGGAAGAGTTCGGTGACGAATTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGGAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCTACTCCGAAACCAAGCGTAtcaaactgct < 1:659170‑M1/149‑11 (MQ=255) cTGGAAGAGTTCGGTGACGAATTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgct < 1:260603‑M1/149‑11 (MQ=255) aaGAGTTCGGTGACGAATTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaa < 2:163729‑M1/149‑15 (MQ=255) gTTCGGTGACGAATTCGACGCGAAGATGGGGGCGGAAGCAATCCGGGCTCTACGGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgt < 1:478400‑M1/149‑19 (MQ=255) ttCGGTGACGAATTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaacagctggaagcgtt > 2:88430‑M1/1‑130 (MQ=255) ggTGACGAATTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgt > 1:691553‑M1/1‑127 (MQ=255) ggTGACGAATTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgt > 1:691659‑M1/1‑127 (MQ=255) gACGAATTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttca > 1:982247‑M1/1‑124 (MQ=255) gACGAATTCGACGCGAAGAGGGGGTCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttca < 2:115131‑M1/149‑26 (MQ=255) gAATTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAccaaactgctggaagcgcacgttcagtc > 2:759084‑M1/1‑121 (MQ=255) aaTTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtct > 1:27527‑M1/1‑120 (MQ=255) tCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggt > 1:860264‑M1/1‑117 (MQ=255) gcgAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtccaactgctggaagcgttcgttcagtctggtaacaa > 2:1054560‑M1/1‑112 (MQ=255) gAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATAAGGTGCAAGATTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggcaacaaaa > 2:822773‑M1/1‑110 (MQ=255) aTGGGGGCGGGAGCAATCCAGGCTCTGGTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccaga < 1:64538‑M1/149‑44 (MQ=255) tGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagag < 2:365060‑M1/149‑45 (MQ=255) ggggCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtg > 2:674878‑M1/1‑103 (MQ=255) ggAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctgcaagcgttcgttcagtctggtaacaaaccagaggggatga > 2:850950‑M1/1‑98 (MQ=255) gCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTACGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtgtggtaacaaaccagagtggatgatcct > 1:622637‑M1/1‑94 (MQ=255) aTCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGACCTGAAAGAAACCAACTCCGAAACCAAGCGTAtcaaacaggtggaagcgtacgttcagtctggtaacaaaccagagtgtaggatcctgac > 1:908434‑M1/1‑91 (MQ=255) cAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagaggggatgatcctgaccgt > 1:438469‑M1/1‑88 (MQ=255) cAGGCTCTGCTGAAGAGCATGGATCTGGAGCAACGGCCCTAACAGCTGCGTGAAGAGCTGAACGAACCCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatgctgaccgt > 2:775605‑M1/1‑88 (MQ=255) ctctGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaacaagagtggatgatcctgaccgtcctg > 1:1089468‑M1/1‑84 (MQ=255) tgctgAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccg > 1:822656‑M1/1‑81 (MQ=255) agCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgatcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgcc > 1:486948‑M1/1‑73 (MQ=255) caggggtctggagCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtcgggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgc < 1:310550‑M1/143‑79 (MQ=255) aTCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagat < 2:154507‑M1/149‑84 (MQ=255) tCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatc < 1:676983‑M1/149‑85 (MQ=255) cTGGAGCAAGAGTGCGAACAGCGGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatct < 2:509904‑M1/149‑86 (MQ=255) agagTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgcccgatctgcgtccgc > 2:513660‑M1/1‑56 (MQ=255) gagTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagaggggatgatcctgaccgttctgccggtcctgccgccagatctgcgtccgct > 2:354286‑M1/1‑55 (MQ=255) agTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctg < 2:446245‑M1/149‑96 (MQ=255) tGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggt > 2:535017‑M1/1‑52 (MQ=255) aCAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAacaaactgctggaagcgttcgttcaggctggtaacaaacaggagtggatgatcctgaccgttctgccggtgctgccgacagatctgcgtccgatggttcggc > 1:293299‑M1/1‑47 (MQ=255) cAGCTGCGTGAAGGGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgct < 1:361473‑M1/149‑104 (MQ=255) aGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctg > 2:1061961‑M1/1‑45 (MQ=255) gCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctgg < 1:494358‑M1/149‑106 (MQ=255) cGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatgg > 1:126000‑M1/1‑40 (MQ=255) aaGAGCTGAACGAAACCAACCCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggt < 2:357439‑M1/149‑114 (MQ=255) agagCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtc > 2:2201‑M1/1‑35 (MQ=255) aaCGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttccgtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgc > 1:960973‑M1/1‑28 (MQ=255) aaCGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgc < 2:407582‑M1/149‑122 (MQ=255) aaCGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtgctcgtttcgc > 2:430251‑M1/1‑28 (MQ=255) aCCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagaggggatgatcctgaccgttctgccgggactgccgccagatctgcgtccgctggttccgctggatggcggtcgtttcgcgacttc > 2:115178‑M1/1‑22 (MQ=255) aCCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccacagtggatgatcctgacagttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggttgtttcgcgacgtc > 1:909266‑M1/1‑22 (MQ=255) ccAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctgctaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttct > 1:774484‑M1/1‑21 (MQ=255) cAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctgggaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctg > 2:181211‑M1/1‑20 (MQ=255) aCTCCGAAACCAAGCGCAtaaaactgctggaagcgttcgttcagtctggtaacaaaccagcgtggatgatcctgaccgttcggccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgac < 1:288353‑M1/149‑132 (MQ=255) tCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacct > 2:486668‑M1/1‑16 (MQ=255) tCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacct > 1:161949‑M1/1‑16 (MQ=255) ccGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacctg > 2:819132‑M1/1‑15 (MQ=255) aaaCCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgctagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacctgaac < 2:691659‑M1/149‑138 (MQ=255) aaaCCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacctgaac < 2:691553‑M1/149‑138 (MQ=255) cAAGCGTAgcaacctgctggaagcgttcgttcagtctggtaacaaaccagatgggatgagcctgaccgttctgccggtactgccgccagagcttcgtccgctggttccgctggctggtggtcgtttcgcgacttctgacctgaacgatc < 2:656569‑M1/149‑142 (MQ=255) aGCGTAtcaaaccgccggaagcgttcgtccagtctggtaacaaaccagagtggatgatcccgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacctgaacgatctg < 2:581606‑M1/149‑144 (MQ=255) tAtcaaactgctggcagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtacggccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacctgaacgatctgtatc < 1:238583‑M1/149‑148 (MQ=255) tAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacctgaacgatctgtatc < 1:454551‑M1/149‑148 (MQ=255) tAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacctgaacgatctgtatc < 2:822656‑M1/149‑148 (MQ=255) | TCTGGACGCGCTGGAAGAGTTCGGTGACGAATTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCGTTCTGCCGGTACTGCCGCCAGATCTGCGTCCGCTGGTTCCGCTGGATGGTGGTCGTTTCGCGACTTCTG > NC_000913/4185843‑4186138 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |