| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2002802 | 80 (0.830) | 3 (0.030) | 3/254 | NT | 3.3% | coding (805/1497 nt) | fliC | flagellar filament structural protein (flagellin) |
| ? | NC_000913 | = 2002863 | 99 (1.060) | coding (744/1497 nt) | fliC | flagellar filament structural protein (flagellin) | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATATGTATCGGTATCATTACCCTTGGAATCCTGCAGTTTTACTAAGCTAACAGCACCAAGGTTGGCAGTTGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2002653‑2002802‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtAACAGTTGCTAATGATGGTACAGTGACAATGGCGACTGGAGCAACGGCAAATGCAACTGTAACTGATGCAAATACTACTAAAGCTACAACTATCACTTCAGGCGGTACACCTGTTCAGATTGATAATACTGCAGGTTCCGCAACTGCC < NC_000913/2002863‑2002716 ATATGTATCGGTATCATTACCCTTGGAATCCTGCAGTTTTACTAAGCTAACAGCACCAAGGTTGGCAGTTGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAG > 2:422171/1‑149 GTATCATTACCCTTGGAATCCTGCAGTTTTACTAAGCTAACAGCACCAAGGTTGGCAGTTGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATC < 3:295009/137‑1 GTATCATTACCCTTGGAATCCTGCAGTTTTACTAAGCTAACAGCACCAAGGTTGGCAGTTGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATC > 4:295009/1‑137 TAAGCTAACAGCACCAAGGTTGGCAGTTGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTAACAGTTGCTAATGATGGTACAGTGACAATGGCGACTGGAG > 4:256000/1‑149 TGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTAACAGTTGCTAATGATGGTACAGTGACAATGGCGACTGGAGCAACGGCAAATGCAACTGTAACTGATG < 1:575407/149‑1 GCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTAACAGTTGCTAATGATGGTACAGTGACAATGGCGACTGGAGCAACGGCAAATGCAACTGTAACTGATGC < 3:256000/149‑1 CAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAG > 1:238505/1‑69 CAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAG < 2:238505/69‑1 CAGTAACAGTTGCTAATGATGGTACAGTGACAATGGCGACTGGAGCAACGGCAAATGCAACTGTAACTGATGCAAATACTACTAAAGCTACAACTATCACTTCAGGCGGTACACCTGTTCAGATTGATAATACTGCAGGTTCCGCAACT < 2:97484/149‑1 TAACAGTTGCTAATGATGGTACAGTGACAATGGCGACTGGAGCAACGGCAAATGCAACTGTAACTGATGCAAATACTACTAAAGCTACAACTATCACTTCAGGCGGTACACCTGTTCAGATTGATAATACTGCAGGTTCCGCAACTGCC > 1:161568/1‑149 TAACAGTTGCTAATGATGGTACAGTGACAATGGCGACTGGAGCAACGGCAAATGCAACTGTAACTGATGCAAATACTACAAAAGCTACAACTATCACTTCAGGCGGTACACCTGTTCAGATTGATAATACTGCAGGTTCCGCAACTGCC > 1:411480/1‑149 ATATGTATCGGTATCATTACCCTTGGAATCCTGCAGTTTTACTAAGCTAACAGCACCAAGGTTGGCAGTTGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2002653‑2002802‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtAACAGTTGCTAATGATGGTACAGTGACAATGGCGACTGGAGCAACGGCAAATGCAACTGTAACTGATGCAAATACTACTAAAGCTACAACTATCACTTCAGGCGGTACACCTGTTCAGATTGATAATACTGCAGGTTCCGCAACTGCC < NC_000913/2002863‑2002716 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |