New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 200280280 (0.830)3 (0.030) 3/254 NT 3.3% coding (805/1497 nt) fliC flagellar filament structural protein (flagellin)
?NC_000913 = 2002863 99 (1.060)coding (744/1497 nt) fliC flagellar filament structural protein (flagellin)
Rejected: Frequency below/above cutoff threshold.

Only 100 of 115 total aligned reads displayed.

GGCAGTTGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAG  >  NC_000913/2002716‑2003009
                                                                                                                                                   |                                                                                                                                                  
ggCAGTTGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTTGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTa                                                                                                                                                   >  1:411480‑M2/1‑148 (MQ=255)
ggCAGTTGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTa                                                                                                                                                   >  1:161568‑M2/1‑148 (MQ=255)
    gTTGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGc                                                                                                                                               <  3:73204/149‑1 (MQ=255)
       gCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTa                                                                                                                                            <  4:260966/149‑1 (MQ=255)
        cGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGACTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTAACTGTACCATCATTAGCAACTGTTACTGCGTaa                                                                                                                                           <  4:843392/149‑1 (MQ=255)
        aggAACCTGCAGTAGTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTCGCCGTTGCTCCAGTCGCCATTCTCACAGAATCATCCTTAGCAACTGAAACTGCggac                                                                                                                                           <  2:854382/148‑4 (MQ=255)
         ggAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAAt                                                                                                                                          >  2:172819/1‑149 (MQ=255)
         ggAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAAt                                                                                                                                          >  4:161200/1‑149 (MQ=255)
          gAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATa                                                                                                                                         >  3:717553/1‑149 (MQ=255)
                    tattatCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCg                                                                                                                               >  4:525648/1‑149 (MQ=255)
                     attatCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGt                                                                                                                              <  2:489341/149‑1 (MQ=255)
                       tatCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTa                                                                                                                            <  3:222817/149‑1 (MQ=255)
                       tatCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCACCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTa                                                                                                                            <  2:384342/149‑1 (MQ=255)
                         tCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATc                                                                                                                          <  3:31204/149‑1 (MQ=255)
                         tCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATc                                                                                                                          >  4:617692/1‑149 (MQ=255)
                           aaTCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATcac                                                                                                                        >  1:495192/1‑149 (MQ=255)
                            aTCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATcacc                                                                                                                       >  1:235370/1‑149 (MQ=255)
                             tCTGAACAGGTGTACCGCCTGTAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTCGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACAATCATTACCAACTGTTACTGCGTAATACTTCCCATCGTTATcacca                                                                                                                      >  2:357264/1‑149 (MQ=255)
                                    aGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGa                                                                                                               >  2:470991/1‑149 (MQ=255)
                                        gtACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGAtttt                                                                                                           <  1:241090/149‑1 (MQ=255)
                                        gtACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGAtttt                                                                                                           >  3:375853/1‑149 (MQ=255)
                                         tACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTc                                                                                                          <  1:406067/149‑1 (MQ=255)
                                            cGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGtt                                                                                                                                                    <  4:342880/104‑1 (MQ=255)
                                            cGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGtt                                                                                                                                                    >  3:342880/1‑104 (MQ=255)
                                              ccTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATa                                                                                                     >  3:611139/1‑149 (MQ=255)
                                               cTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAg                                                                                                    >  2:140732/1‑149 (MQ=255)
                                                   aGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAAt                                                                                                <  3:48786/149‑1 (MQ=255)
                                                      gATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCAt                                                                                             >  1:724572/1‑149 (MQ=255)
                                                       aTAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCAtt                                                                                            >  1:465683/1‑149 (MQ=255)
                                                         aGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTAc                                                                                          <  3:525648/149‑1 (MQ=255)
                                                           ttGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCa                                                                                        >  3:661492/1‑149 (MQ=255)
                                                           ttGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCa                                                                                        >  3:564443/1‑149 (MQ=255)
                                                               aGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTAt                                                                                    <  4:645546/149‑1 (MQ=255)
                                                                  tttAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCTTTATCACCACCGTTGATTTTCGCATAGTAATCATTACCATTATctg                                                                                 >  3:362781/1‑147 (MQ=255)
                                                                  tttAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAg                                                                                 >  1:179907/1‑149 (MQ=255)
                                                                  tttAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAg                                                                                 <  1:422171/149‑1 (MQ=255)
                                                                  tttAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAg                                                                                 >  4:273577/1‑149 (MQ=255)
                                                                   ttAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGt                                                                                >  4:224524/1‑149 (MQ=255)
                                                                      gtagtaTTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGtata                                                                             >  4:211762/1‑149 (MQ=255)
                                                                       tagtaTTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATaa                                                                            >  4:561135/1‑149 (MQ=255)
                                                                            tttGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACAcc                                                                       >  2:417092/1‑149 (MQ=255)
                                                                            tttGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACAcc                                                                       >  4:575406/1‑149 (MQ=255)
                                                                               gCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTactgatgcaaatactactaaagctacaactatcacttcaggcggtacacctgttcagattgataatactgcaggttccgc                                                                    <  3:256000‑M2/149‑81 (MQ=255)
                                                                                cATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTactgatgcaaatactactaaagctacaactatcacttcaggcggtacacctgttcagattgataatactgcaggttccgca                                                                   <  1:575407‑M2/149‑82 (MQ=255)
                                                                                   cAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCaaat                                                                <  2:430841/149‑3 (MQ=255)
                                                                                      ttACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCaa                                                                  <  2:836487/144‑1 (MQ=255)
                                                                                      ttACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCaa                                                                  >  1:836487/1‑144 (MQ=255)
                                                                                      ttACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGaa                                                             <  1:172819/149‑1 (MQ=255)
                                                                                           gTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTgg                                                        <  4:811296/149‑1 (MQ=255)
                                                                                           gTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTgg                                                        <  4:719523/149‑1 (MQ=255)
                                                                                           gTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTgg                                                        <  4:700576/149‑1 (MQ=255)
                                                                                           gTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTgg                                                        >  4:37556/1‑149 (MQ=255)
                                                                                           gTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTgg                                                        <  3:631545/149‑1 (MQ=255)
                                                                                            ttGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATaa                                                                            >  1:203291/1‑128 (MQ=255)
                                                                                            ttGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATaa                                                                            <  2:203291/128‑1 (MQ=255)
                                                                                            ttGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTggg                                                       >  3:280037/1‑149 (MQ=255)
                                                                                            ttGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTggg                                                       >  2:412561/1‑149 (MQ=255)
                                                                                              gCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTAt                                                                                    >  3:432437/1‑118 (MQ=255)
                                                                                              gCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTAt                                                                                    <  4:432437/118‑1 (MQ=255)
                                                                                              gCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGtt                                                     <  1:615580/149‑1 (MQ=255)
                                                                                                 tttGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTaa                                                                                                 <  1:133779/102‑1 (MQ=255)
                                                                                                 tttGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGt                                                  >  2:559671/1‑149 (MQ=255)
                                                                                                        ttGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCa                                           >  2:54627/1‑149 (MQ=255)
                                                                                                           cTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTactgatgcaaatactactaaagctacaactatcacttcaggcggtacacctgttcagattgataatactgcaggttccgcaactgccaaccttggtgctgttagctta                                        >  4:256000‑M2/1‑41 (MQ=255)
                                                                                                              cAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCa                                     >  4:331811/1‑149 (MQ=255)
                                                                                                                gTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTCTAAACACCCTCAATTGAAGCTGGGTTAGTTCCTCCAGTATCAGt                                   >  3:770173/1‑149 (MQ=255)
                                                                                                                gTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGt                                   <  1:457564/149‑1 (MQ=255)
                                                                                                                 tCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCa                                                                                              >  4:351690/1‑89 (MQ=255)
                                                                                                                   gCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGaa                                                             <  4:51830/120‑1 (MQ=255)
                                                                                                                   gCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGaa                                                             >  3:51830/1‑120 (MQ=255)
                                                                                                                    ccATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGgct                               >  3:408929/1‑149 (MQ=255)
                                                                                                                    ccATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGgct                               >  2:549519/1‑149 (MQ=255)
                                                                                                                    ccATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGgct                               >  3:14462/1‑149 (MQ=255)
                                                                                                                          tCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTg                                                         >  2:810167/1‑117 (MQ=255)
                                                                                                                          tCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTg                                                         <  1:810167/117‑1 (MQ=255)
                                                                                                                            aCTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGt                       >  4:118964/1‑149 (MQ=255)
                                                                                                                            aCTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGt                       >  3:193128/1‑149 (MQ=255)
                                                                                                                            aCTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGt                       <  1:97484/149‑1 (MQ=255)
                                                                                                                            aCTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGt                       <  4:408929/149‑1 (MQ=255)
                                                                                                                            aCTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGt                       <  4:717553/149‑1 (MQ=255)
                                                                                                                            aCTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGt                       >  1:130853/1‑149 (MQ=255)
                                                                                                                             cTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTa                      >  4:770540/1‑149 (MQ=255)
                                                                                                                             cTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTa                      <  1:54627/149‑1 (MQ=255)
                                                                                                                             cTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTa                      >  2:6458/1‑149 (MQ=255)
                                                                                                                               gTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGa                    >  1:494417/1‑149 (MQ=255)
                                                                                                                                  ccATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAg                 >  2:805680/1‑149 (MQ=255)
                                                                                                                                   catcatTAGCAACTGTTACTGCGTAATACTTCCCATCGt                                                                                                                              >  2:721714/1‑39 (MQ=255)
                                                                                                                                   catcatTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAgg                >  1:781102/1‑149 (MQ=255)
                                                                                                                                   catcatTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAgg                >  4:679963/1‑149 (MQ=255)
                                                                                                                                     tcatTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGt              >  1:97082/1‑149 (MQ=255)
                                                                                                                                       ggtAGCCACTGTTACTGCGTAATACATCCCATAGTTATACCCTCCGGTGATTTTCGGAGAGCAATCGTAACCCTTCCCCGGTTAATCCCCCGCACGTCAAGCTGAGTTAGTTCCGCCAGTATCAGTCGCTGCCCCCGTAAAAAGGGTaa            <  1:6458/147‑1 (MQ=255)
                                                                                                                                       atTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATAATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGATAGGGTaa            <  3:37556/149‑1 (MQ=255)
                                                                                                                                        ttAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAAt           >  4:432466/1‑149 (MQ=255)
                                                                                                                                           gCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGaaa                  <  3:435004/139‑1 (MQ=255)
                                                                                                                                           gCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGaaa                  >  4:435004/1‑139 (MQ=255)
                                                                                                                                           gCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTcc        >  3:502704/1‑149 (MQ=255)
                                                                                                                                                tGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTaa   <  1:143402/149‑1 (MQ=255)
                                                                                                                                                 gTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAg  >  2:683258/1‑149 (MQ=255)
                                                                                                                                                 gTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAg  >  1:827921/1‑149 (MQ=255)
                                                                                                                                                 gTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAg  >  4:299132/1‑149 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
GGCAGTTGCGGAACCTGCAGTATTATCAATCTGAACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAG  >  NC_000913/2002716‑2003009

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.