New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 982946	107 (0.780)	11 (0.080)	10/214	NT	9.5%	intergenic (+52/‑129)	ldtD/ycbK	murein L,D‑transpeptidase/M15A protease‑related family periplasmic protein
	?	NC_000913	= 982957	108 (0.830)					intergenic (+63/‑118)	ldtD/ycbK	murein L,D‑transpeptidase/M15A protease‑related family periplasmic protein

CAGATGGTCGTACCCAGTATCGTACAGATATTTACAATTATGATCTGCCTGCGCGATCCAGCTCGCAAATCGTATCGAAAGCGGAACAATTAATCAGGTAAATGAAGTAGTTCGGGGAAATCAGTTGTCGTAATAATTAGCATGATTGGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/982794‑982946 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggggcTGCAGAGAATCGCCCCCAATCATGCTAATTATTACGACAACTGATTTCCCCGAACTACTTCATTTACCTGATTAATTGTTCCGCTTTCGATACGATTTGCGAGCTGGATCGCGCAGGCAGATCATAATTGTAAATATCT  <  NC_000913/982957‑982819                                                                                                                                                                                                                                                                                                      CAGATGGTCGTACCCAGTATCGTACAGATATTTACAATTATGATCTGCCTGCGCGATCCAGCTCGCAAATCGTATCGAAAGCGGAACAATTAATCAGGTAAATGAAGTAGTTCGGGGAAATCAGTTGTCGTAATAATTAGCATGATTGG                                                                                                                                                 <  2:1164769/149‑1  AGATGGTCGTACCCAGTATCGTACAGATATTTACAATTATGATCTTCCTGCGCGATCCAGCTCGCAAATCGTATCGAAAGCGGAACAATTAATCAGGTAAATGAAGTAGTTCGGGGAAATCAGTTGTCGTAATAATTAGCATGATTGGG                                                                                                                                                >  2:549725/1‑149  AGATGGTCGTACCCAGTATCGTACAGATATTTACAATTATGATCTGCCTGCGCGATCCAGCTCGCAAATCGTATCGAAAGCGGAACAATTAATCAGGTAAATGAAGTAGTTCGGGGAAATCAGTTGTCGTAATAATTAGCATGATTGGG                                                                                                                                                <  3:1243503/149‑1    ATGGTCGTACCCAGTATCGTACAGATATTTACAATTATGATCTGCCTGCGCGATCCAGCTCGCAAATCGTATCGAAAGCGGAACAATTAATCAGGTAAATGAAGTAGTTCGGGGAAATCAGTTGTCGTAATAATTAGCATGATTGGGGG                                                                                                                                              <  1:1210017/149‑1    ATGGTCGTACCCAGTATCGTACAGATATTTACAATTATGATCTGCCTGCGCGATCCAGCTCGCAAATCGTATCGAAAGCGGAACAATTAATCAGGTAAATGAAGTAGTTCGGGGAAATCAGTTGTCGTAATAATTAGCATGATTGGGGG                                                                                                                                              <  1:224323/149‑1        TCGTACCCAGTATCGTACAGATATTTACAATTATGATCTGCCTGCGCGATCCAGCTCGCAAATCGTATCGAAAGCGGAACAATTAATCAGGTAAATGAAGTAGTTCGGGGAAATCAGTTGTCGTAATAATTAGCATGATTGGG                                                                                                                                                <  4:635983/143‑1        TCGTACCCAGTATCGTACAGATATTTACAATTATGATCTGCCTGCGCGATCCAGCTCGCAAATCGTATCGAAAGCGGAACAATTAATCAGGTAAATGAAGTAGTTCGGGGAAATCAGTTGTCGTAATAATTAGCATGATTGGG                                                                                                                                                >  3:635983/1‑143           TACCCAGTATCGTACAGATATTTACAATTATGATCTGCCTGCGCGATCCAGCTCGCAAATCGTATCGAAAGCGGAACAATTAATCAGGTAAATGAAGTAGTTCGGGGAAATCAGTTGTCGTAATAATTAGCATGATTGGGGGCTGCAGA                                                                                                                                       >  1:1457611/1‑149               CAGTATCGTACAGATATTTACAATTATGATCTGCCTGCGCGATCCAGCTCGCAAATCGTATCGAAAGCGGAACAATTAATCAGGTAAATGAAGTAGTTCGGGGAAATCAGTTGTCGTAATAATTAGCATGATTGGGG                                                                                                                                               <  4:1420455/137‑1               CAGTATCGTACAGATATTTACAATTATGATCTGCCTGCGCGATCCAGCTCGCAAATCGTATCGAAAGCGGAACAATTAATCAGGTAAATGAAGTAGTTCGGGGAAATCAGTTGTCGTAATAATTAGCATGATTGGGG                                                                                                                                               >  3:1420455/1‑137                                              TGCCTGCGCGATCCAGCTCGCAAATCGTATCGAAAGCGGAACAATTAATCAGGTAAATGAAGTAGTTCGGGGAAATCAGTTGTCGTAATAATTAGCATGATTGGGGGCTGCAGAGAATCGCCCCC                                                                                                                            >  1:435033/1‑125                                              TGCCTGCGCGATCCAGCTCGCAAATCGTATCGAAAGCGGAACAATTAATCAGGTAAATGAAGTAGTTCGGGGAAATCAGTTGTCGTAATAATTAGCATGATTGGGGGCTGCAGAGAATCGCCCCC                                                                                                                            <  2:435033/125‑1                                                         TCCAGCTCGCAAATCGTATCGAAAGCGGAACAATTAATCAGGTAAATGAAGTAGTTCGGGGAAATCAGTTGTCGTAATAATTAGCATGATCGGGGGCTGCAGAGAATCGCCCCCAAT                                                                                                                         >  1:826150/1‑117                                                         TCCAGCTCGCAAATCGTATCGAAAGCGGAACAATTAATCAGGTAAATGAAGTAGTTCGGGGAAATCAGTTGTCGTAATAATTAGCATGATCGGGGGCTGCAGAGAATCGCCCCCAAT                                                                                                                         <  2:826150/117‑1                                                                 GCAAATCGTATCGAAAGCGGAACAATTAATCAGGTAAATGAAGTAGTTCGGGGAAATCAGTTGTCGTAATAATTAGCATGATTGG                                                                                                                                                 >  4:957713/1‑85                                                                 GCAAATCGTATCGAAAGCGGAACAATTAATCAGGTAAATGAAGTAGTTCGGGGAAATCAGTTGTCGTAATAATTAGCATGATTGG                                                                                                                                                 <  3:957713/85‑1                                                                                AGCGGAACAATTAATCAGGTAAATGAAGTAGTTCGGGGAAATCAGTTGTCGTAATAATTAGCATGATTGGGGGCTGCAGAGAATCGCCCCCAA                                                                                                                          <  2:754681/93‑1                                                                                AGCGGAACAATTAATCAGGTAAATGAAGTAGTTCGGGGAAATCAGTTGTCGTAATAATTAGCATGATTGGGGGCTGCAGAGAATCGCCCCCAA                                                                                                                          >  1:754681/1‑93                                                                                              TCAGGTAAATGAAGTAGTTCGGGGAAATCAGTTGTCGTAATAATTAGCATGATTGGGGGCTGCAGAGAATCGCCCCCAAT                                                                                                                         >  4:925980/1‑80                                                                                              TCAGGTAAATGAAGTAGTTCGGGGAAATCAGTTGTCGTAATAATTACCATGATTGGGGGCTGCAGAGAATCGCCCCCAAT                                                                                                                         <  3:925980/80‑1                                                                                                  GTAAATGAAGTAGTTCGGGGAAATCAGTTGTCGTAATAATTAGCATGATTGG                                                                                                                                                 >  3:1370677/1‑52                                                                                                  GTAAATGAAGTAGTTCGGGGAAATCAGTTGTCGTAATAATTAGCATGATTGG                                                                                                                                                 <  4:1370677/52‑1                                                                                                     AATGAAGTAGTTCGGGGAAATCAGTTGTCGTAATAATTAGCATGATTGGGGGCTGCAGAGAATCGCCC                                                                                                                              >  2:1125904/1‑68                                                                                                     AATGAAGTAGTTCGGGGAAATCAGTTGTCGTAATAATTAGCATGATTGGGGGCTGCAGAGAATCGCCC                                                                                                                              <  1:1125904/68‑1                                                                                                                                                     GGGGCTGCAGAGAATCGCCCCCAATCATGCTAATTATTACGACAACTGATTTCCCCGAACTACTTCATTTACCTGATTAATTGTTCCGCTTTCGATACGATTTGCGAGCTGGATCGCGCAGGCAGATCATAATTGTAAATATCT  <  2:559323/144‑1                                                                                                                                                     GGGGCTGCAGAGAATCGCCCCCAATCATGCTAATTATTACGACAACTGATTTCCCCGAACTACTTCATTTACCTGATTAATTGTTCCGCTTTCGATACGATTTGCGAGCTGGATCGCGCAGGCAGATCATAATTGTAAATATCT  >  1:559323/1‑144                                                                                                                                                      GGGCTGCAGAGAATCGCCCCCAATCATGCTAATTATTACGACAACTGATTTCCCCGAACTACTTCATTTACCTGATTAATTGTTC                                                            <  2:682297/85‑1                                                                                                                                                      GGGCTGCAGAGAATCGCCCCCAATCATGCTAATTATTACGACAACTGATTTCCCCGAACTACTTCATTTACCTGATTAATTGTTC                                                            >  1:682297/1‑85                                                                                                                                                      GGGCTGCAGAGAATCGCCCCCAATCATGCTAATTATTACGACAACTGATTTCCCCGAACTACTTCATTTACCTGATTAA                                                                  >  2:1283168/1‑79                                                                                                                                                      GGGCTGCAGAGAATCGCCCCCAATCATGCTAATTATTACGACAACTGATTTCCCCGAACTACTTCATTTACCTGATTAA                                                                  <  1:1283168/79‑1                                                                                                                                                                                                                                                                                                      CAGATGGTCGTACCCAGTATCGTACAGATATTTACAATTATGATCTGCCTGCGCGATCCAGCTCGCAAATCGTATCGAAAGCGGAACAATTAATCAGGTAAATGAAGTAGTTCGGGGAAATCAGTTGTCGTAATAATTAGCATGATTGGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/982794‑982946 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggggcTGCAGAGAATCGCCCCCAATCATGCTAATTATTACGACAACTGATTTCCCCGAACTACTTCATTTACCTGATTAATTGTTCCGCTTTCGATACGATTTGCGAGCTGGATCGCGCAGGCAGATCATAATTGTAAATATCT  <  NC_000913/982957‑982819

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.