New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1021683 =	152 (1.100)	16 (0.120)	11/216	NT	10.3%	coding (546/630 nt)	sxy	CRP‑S‑dependent promoter expression factor
	?	NC_000913	1021709 =	132 (1.000)					coding (572/630 nt)	sxy	CRP‑S‑dependent promoter expression factor

TCTGGTCGTACAACAAGTTGGATTATTGATTGCATTACTGCCTGAGATTGGTCGTCTGCAACGCCAGATTACTCAAGTTCCGCAGGAAACTCCTGTTTCGGCGTAAGAGAGTCAGCCCATTCTGCAAGCTCCTGGCGGCGTGCCACCGGGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1021835‑1021683 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAATCTGGCGTTGCAGACGACCAATCTCAGGCAGTAATGCAATCAATAATCCAACTTGTTGTACGACCAGAGGTTCTTTGCTGTCTGCCC  >  NC_000913/1021709‑1021854                                                                                                                                                                                                                                                                                                             TCTGGTCGTACAACAAGTTGGATTATTGATTGCATTACTGCCTGAGATTGGTCGTCTGCAACGCCAGATTACTCAAGTTCCGCAGGAAACTCCTGTTTCGGCGTAAGAGAGTCAGCCCATTCTGCAAGCTCCTGGCGGCGTGCCACCGG                                                                                                                                                        <  3:382519/149‑1   TGGTCGTACAACAAGTTGGATTATTGATTGCATTACTGCCTGAGATTGGTCGTCTGCAACGCCAGATTACTCAAGTTCCGCAGGAAACTCCTGTTTCGGCGTAAGAGAGTCAGCCCATTCTGCAAGCTCCTGGCGGCGTGCCACCGGGA                                                                                                                                                      <  4:603496/149‑1   TGGTCGTACAACAAGTTGGATTATTGATTGCATTACTGCCTGAGATTGGTCGTCTGCAACGCCAGATTACTCAAGTTCCGCAGGAAACTCCTGTTTCGGCGTAAGAGAGTCAGCCCATTCTGCAAGCTCCTGGCGGCGTGCCACCGGGA                                                                                                                                                      >  3:1266449/1‑149   TGGTCGTACAACAAGTTGGATTATTGATTGCATTACTGCCTGAGATTGGTCGTCTGCAACGCCAGATTACTCAAGTTCCGCAGGAAACTCCTGTTTAGGCGTAAGAGAGTCAGCCCATTCTGCAAGCTCATGGCGGCGTGCCACCGGGA                                                                                                                                                      <  4:922083/149‑1    GGTCGTACAACAAGTTGGATTATTGATTGCATTACTGCCTGAGATTGGTCGTCTGCAACGCCAGATTACTCAAGTTCCGCAGGAAACTCCTGTTTCGGCGTAAGAGAGTCAGCCCATTCTGCAAGCTCCTGGCGGCGTGCCACCGGGAG                                                                                                                                                     >  1:989769/1‑149     GTCGTACAACAAGTTGGATTATTGATTGCATTACTGCCTGAGATTGGTCGTCTGCAACGCCAGATTACTCAAGTTCCGCAGGAAACTCCTGTTTCGGCGTAAGAGAGTCAGCCCATTCTGCAAGCTCCTGGCGGCGTGCCACCGGGAGC                                                                                                                                                    >  3:149680/1‑149     GTCGTACAACAAGTTGGATTATTGATTGCATTACTGCCTGAGATTGGTCGTCTGCAACGCCAGATTACTCAAGTTCCGCAGGAAACTCCTGTTTCGGCGTAAGAGAGACAGCCCATTCTGCAAGCTCCTGGCGGCGTGCCACCGGGAGC                                                                                                                                                    <  3:303466/149‑1           CAACAAGTTGGATTATTGATTGCATTACTGCCTGAGATTGGTCGTCTGCAACGCCAGATTACTCAAGTTCCGCAGGAAACTCCTGTTTCGGCGTAAGAGAGTCAGCCCATTCTGCAAGCTCCTGGCGGCGTGCCACCGG                                                                                                                                                        <  3:292855/139‑1           CAACAAGTTGGATTATTGATTGCATTACTGCCTGAGATTGGTCGTCTGCAACGCCAGATTACTCAAGTTCCGCAGGAAACTCCTGTTTCGGCGTAAGAGAGTCAGCCCATTCTGCAAGCTCCTGGCGGCGTGCCACCGG                                                                                                                                                        >  4:292855/1‑139            AACAAGTTGGATTATTGATTGCATTACTGCCTGAGATTGGTCGTCTGCAACGCCAGATTACTCAAGTTCCGCAGGAAACTCCTGTTTCGGCGTAAGAGAGTCAGCCCATTCTGCAAGCTCCTGGCGGCGTGCCACCGG                                                                                                                                                        <  3:1238515/138‑1            AACAAGTTGGATTATTGATTGCATTACTGCCTGAGATTGGTCGTCTGCAACGCCAGATTACTCAAGTTCCGCAGGAAACTCCTGTTTCGGCGTAAGAGAGTCAGCCCATTCTGCAAGCTCCTGGCGGCGTGCCACCGG                                                                                                                                                        >  4:1238515/1‑138                                           TGAGATTGGTCGTCTGCAACGCCAGATTACTCAAGTTCCGCAGGAAACTCCTGTTTCGGCGTAAGAGAGTCAGCCCATTCTGCAAGCTCCCGGTGGCACGCCGCCAGGAGCTT                                                                                                                                                  <  2:825707/113‑1                                              GATTTGTCGTCTGCAACGCCAGATAACTCAAGTTCCGCAGGAAACTCCTGTTTCGGCGTAAGAGAGTCAGCCCATTCTGCAAGCTCCTGGCGGCGTGCCACCGGGA                                                                                                                                                      >  1:1242509/1‑106                                              GATTGGTCGTCTGCAACGCCAGATTACTCAAGTTCCGCAGGAAACTCCTGTTTCGGCGTAAGAGAGTCAGCCCATTCTGCAAGCTCCTGGCGGCGTGCCACCGGGA                                                                                                                                                      <  2:1242509/106‑1                                                                                                                              AAGCTCCTGGCGGCGTGCCACCGGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAATCTGGCGTTGCAGACGACCAATCTCA                                                               <  1:825707/113‑1                                                                                                                                  TCCTGGCGGCGTGCCACCGGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAATCTGGCGTTGCAGACGACCAATCTCAGGCAGTAATGCAATCAATAATCCAACTTGTTGTACGACCA                       >  2:106472/1‑149                                                                                                                                  TCCTGGCGGCGTGCCACCGGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAATCTGGCGTTGCAGACGACCAATCTCAGGCAGTAATGCAATCAATAATCCAACTTGTTGTACGACCA                       >  3:512637/1‑149                                                                                                                                  TCCTGGCGGCGTGCCACCGGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAATCTGGCGTTGCAGACGACCAATCTCAGGCAGTAATGCAATCAATAATCCAACTTGTTGT                              <  3:938565/142‑1                                                                                                                                  TCCTGGCGGCGTGCCACCGGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAATCTGGCGTTGCAGACGACCAATCTCAGGCAGTAATGCAATCAATAATCCAACTTGTTGT                              >  4:938565/1‑142                                                                                                                                  TCCTGGCGGCGTGCCACCGGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAATCTGGCGTTGCAGACGACCAATCTCAGGCAGTAATGCAATCAATAATCCAA                                      >  2:827049/1‑134                                                                                                                                  TCCTGGCGGCGTGCCACCGGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAATCTGGCGTTGCAGACGACCAATCTCAGGCAGTAATGCAATCAATAATCCAA                                      <  1:827049/134‑1                                                                                                                                  TCCTGGCGGCGTGCCACCGGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAATCTGGCGTTGC                                                                              <  1:1067989/94‑1                                                                                                                                  TCCTGGCGGCGTGCCACCGGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAATCTGGCGTTGC                                                                              >  2:1067989/1‑94                                                                                                                                  TCCTGGCGGCGTGCCACCGGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAAC                                                                                                 >  2:602833/1‑75                                                                                                                                  TCCTGGCGGCGTGCCACCGGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAAC                                                                                                 <  1:602833/75‑1                                                                                                                                   CCTGGCGGCGTGCCACCGGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAATCTGGCGTTGCAGACGACCAATCTCAGGCAGTAATGCAATCAATAATCCA                                       <  2:908673/132‑1                                                                                                                                   CCTGGCGGCGTGCCACCGGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAATCTGGCGTTGCAGACGACCAATCTCAGGCAGTAATGCAATCAATAATCCA                                       >  1:908673/1‑132                                                                                                                                            GTGCCACCGGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAATCTGGCGTTGCAGACGACCAATCTCAGGCAGTAATGCAATCAATAATCCAACTTGTTGTACGACCAGAGGTTCTTT             >  1:1340657/1‑149                                                                                                                                            GTGCCACCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAATCTGGCGT                                                                                 >  2:1156192/1‑81                                                                                                                                            GTGCCACCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAATCTGGCGT                                                                                 <  1:1156192/81‑1                                                                                                                                                   CGGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAATCTGGCGTTGCAGACGACCAATCTCAGGCAGTAATGCAATCAATAATCCAACTTGTTGTACGACCAGAGGTTCTTTGCTGTCT      <  2:1340657/149‑1                                                                                                                                                      GAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAATCTGGCGTTGCAGACGACCAATCTCAGGCAGTAATGCAATCAATAATCCAA                                      >  3:824662/1‑114                                                                                                                                                      GAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAATCTGGCGTTGCAGACGACCAATCTCAGGCAGTAATGCAATCAATAATCCAA                                      <  4:824662/114‑1                                                                                                                                                       AGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAATCTGGCGTTGCAGACGACCAATCTCAGGCAGTAATGCAATCAATAATCCAACTTGTTGTACGACCAGAGGTTCTTTGCTGTCTGCCC  >  3:558879/1‑149                                                                                                                                                                                                                                                                                                             TCTGGTCGTACAACAAGTTGGATTATTGATTGCATTACTGCCTGAGATTGGTCGTCTGCAACGCCAGATTACTCAAGTTCCGCAGGAAACTCCTGTTTCGGCGTAAGAGAGTCAGCCCATTCTGCAAGCTCCTGGCGGCGTGCCACCGGGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1021835‑1021683 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAATCTGGCGTTGCAGACGACCAATCTCAGGCAGTAATGCAATCAATAATCCAACTTGTTGTACGACCAGAGGTTCTTTGCTGTCTGCCC  >  NC_000913/1021709‑1021854

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.