New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3631094 =	147 (1.060)	12 (0.090)	12/212	NT	8.1%	coding (1497/1623 nt)	yhiJ	DUF4049 family protein
	?	NC_000913	3631118 =	133 (1.030)					coding (1473/1623 nt)	yhiJ	DUF4049 family protein

TGAAGCACTATTAGCATGTTCACAAATGTTAGGTATAAATCAAGTTGTTGCACATAACGGAAATGGTGGAAGAGAACGCATAGGCGAAACGGGGACAGTTTTAGGTCTTAACGCCCGTGACAGTAAACATGCTGGAAGAATGTTCAGCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3631244‑3631094 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcatgTTTACTGTCACGGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCTAACATTTGTGAACATGCTAATAGTGCTTCAAGTTTAGGTCTGTAATCTGT  >  NC_000913/3631118‑3631264                                                                                                                                                                                                                                                                                                            TGAAGCACTATTAGCATGTTCACAAATGTTAGGTATAAATCAAGTTGTTGCACATAACGGAAATGGTGGAAGAGAACGCATAGGCGAAACGGGGACAGTTTTAGGTCTTAACGCCCGTGACAGTAAACATGCTGGAAGAATGTTCAGCA                                                                                                                                                       <  2:212450/149‑1                   TTCACAAATGTTAGGTATAAATCAAGTTGTTGCACATAACGGAAATGGTGGAAGAGAACGCATAGGCGAAACGGGGACAGTTTTAGGTCTTAACGCCCGTGACAGTAAACATGCTGGAAGAATGTTCA                                                                                                                                                          <  4:1351089/128‑1                   TTCACAAATGTTAGGTATAAATCAAGTTGTTGCACATAACGGAAATGGTGGAAGAGAACGCATAGGCGAAACGGGGACAGTTTTAGGTCTTAACGCCCGTGACAGTAAACATGCTGGAAGAATGTTCA                                                                                                                                                          >  3:1351089/1‑128                      ACAAATGTTAGGTATAAATCAAGTTGTTGCACATAACGGAAATGGTGGAAGAGAACGCATAGGCGAAACGGGGACAGTTTTAGGTCTTAACGCCCGTGACAGTAAACATGCTGGAAGAATGTTCAGCA                                                                                                                                                       <  1:1251002/128‑1                      ACAAATGTTAGGTATAAATCAAGTTGTTGCACATAACGGAAATGGTGGAAGAGAACGCATAGGCGAAACGGGGACAGTTTTAGGTCTTAACGCCCGTGACAGTAAACATGCTGGAAGAATGTTCAGCA                                                                                                                                                       >  2:1251002/1‑128                               AGGTATAAATCAAGTTGTTGCACATAACGGAAATGGTGGAAGAGAACGCATAGGCGAAACGGGGACAGTTTTAGGTCTTAACGCCCGTGACAGTAAACATGCTGGAAGAATGTTC                                                                                                                                                           <  4:374271/115‑1                               AGGTATAAATCAAGTTGTTGCACATAACGGAAATGGTGGAAGAGAACGCATAGGCGAAACGGGGACAGTTTTAGGTCTTAACGCCCGTGACAGTAAACATGCTGGAAGAATGTTC                                                                                                                                                           >  3:374271/1‑115                                 GTATAAATCAAGTTGTTGCACATAACGGAAATGGTGGAAGAGAACGCATAGGCGAAACGGGGACAGTTTTAGGTCTTAACGCCCGTGACAGTAAACATGCTGGAAGAATGTTCAGCA                                                                                                                                                       >  3:701956/1‑117                                 GTATAAATCAAGTTGTTGCACATAACGGAAATGGTGGAAGAGAACGCATAGGCGAAACGGGGACAGTTTTAGGTCTTAACGCCCGTGACAGTAAACATGCTGGAAGAATGTTCAGCA                                                                                                                                                       <  4:701956/117‑1                                                           GGAAATGGTGGAAGAGAACGCATAGGCGAAACGGGGACAGTTTTAGGTCTTAACGCCCGTGACAGTAAACATGCTGGAAGAATGTTCAGCA                                                                                                                                                       <  3:421420/91‑1                                                           GGAAATGGTGGAAGAGAACGCATAGGCGAAACGGGGACAGTTTTAGGTCTTAACGCCCGTGACAGTAAACATGCTGGAAGAATGTTCAGCA                                                                                                                                                       >  4:421420/1‑91                                                                                                                           GTAAACATGCTGGAAGAATGTTCAGCATGTTTACTGTCACGGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAA                                                                     <  1:1238462/109‑1                                                                                                                           GTAAACATGCTGGAAGAATGTTCAGCATGTTTACTGTCACGGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAA                                                                     >  2:1238462/1‑109                                                                                                                            TAAACATGCTGGAAGAATGTTCAGCATGTTTACTGTCACGGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTC                                                                                          <  3:1144242/87‑1                                                                                                                            TAAACATGCTGGAAGAATGTTCAGCATGTTTACTGTCACGGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTC                                                                                          >  4:1144242/1‑87                                                                                                                              AACATGCTGGAAGAATGTTCAGCATGTTTACTGTCACGGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGAT                                                            >  2:176355/1‑115                                                                                                                              AACATGCTGGAAGAATGTTCAGCATGTTTACTGTCACGGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGAT                                                            <  1:176355/115‑1                                                                                                                                CATGCTGGAAGAATGTTCAGCATGTTTACTGTCACGGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCTAACATTTGTGAACATGCTAATAGTGCT                         >  3:1346360/1‑148                                                                                                                                CATGCTGGAAGAATGTTCAGCATGTTTACTGTCACGGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCTAACATTTGTGAACATGCTAATAGTGCT                         <  4:1346360/148‑1                                                                                                                                  TGCTGGAAGAATGTTCAGCATGTTTACTGTCACGGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTA                                                         <  4:1464835/114‑1                                                                                                                                  TGCTGGAAGAATGTTCAGCATGTTTACTGTCACGGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTA                                                         >  3:1464835/1‑114                                                                                                                                          GAATGTCCAGCATGTTTACTGTCACGGGCGTTAAGA                                                                                                                               >  2:1000306/1‑36                                                                                                                                          GAATGTCCAGCATGTTTACTGTCACGGGCGTTAAGA                                                                                                                               <  1:1000306/36‑1                                                                                                                                                 CAGCATGTTTACTGTCACGGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTT                                                                             >  3:764005/1‑79                                                                                                                                                 CAGCATGTTTACTGTCACGGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTT                                                                             <  4:764005/79‑1                                                                                                                                                  AGCATGTTTACTGTCACGGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCTAACATTTGTGAACATGCTAATAGTGCT                         <  1:1108808/130‑1                                                                                                                                                  AGCATGTTTACTGTCACGGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCTAACATTTGTGAACATGCTAATAGTGCT                         >  2:1108808/1‑130                                                                                                                                                   GCATGTTTACTGTCACGGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCTAACATTTGTGAACATGCTAATAGTGCTTCAAGTTTAGGTCT           >  3:415243/1‑143                                                                                                                                                   GCATGTTTACTGTCACGGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCTAACATTTGTGAACATGCTAATAGTGCTTCAAGTTTAGGTCT           <  4:415243/143‑1                                                                                                                                                   GCATGTTTACTGTCACGGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATAC                                                      >  4:23943/1‑100                                                                                                                                                   GCATGTTTACTGTCACGGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATAC                                                      <  3:23943/100‑1                                                                                                                                                      TGTTTACTGTCACGGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCTAACATTTGTGAACATGCTAATAGTGCTTCAAGTTTAGGTCTGTAATCTGT  <  2:591318/149‑1                                                                                                                                                                                                                                                                                                            TGAAGCACTATTAGCATGTTCACAAATGTTAGGTATAAATCAAGTTGTTGCACATAACGGAAATGGTGGAAGAGAACGCATAGGCGAAACGGGGACAGTTTTAGGTCTTAACGCCCGTGACAGTAAACATGCTGGAAGAATGTTCAGCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3631244‑3631094 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcatgTTTACTGTCACGGGCGTTAAGACCTAAAACTGTCCCCGTTTCGCCTATGCGTTCTCTTCCACCATTTCCGTTATGTGCAACAACTTGATTTATACCTAACATTTGTGAACATGCTAATAGTGCTTCAAGTTTAGGTCTGTAATCTGT  >  NC_000913/3631118‑3631264

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.