New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3670807 =	109 (0.790)	6 (0.050)	6/216	NT	5.5%	coding (1216/1650 nt)	treF	cytoplasmic trehalase
	?	NC_000913	3670847 =	104 (0.790)					coding (1256/1650 nt)	treF	cytoplasmic trehalase

GTTTCGTACTCGCTTGCCAGAATCCCGCCAGGTGTCAGTAACCGACTGCGCACGGCGTTTGCCAGACGATCGGCCTGTTCATGGTTCGCCATACCGACATAGAGTGGCACAATGGCGGCAGCGGAAAACAGCGCCAGTTGTTCGCGTCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3670958‑3670807 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccaTTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGACACCTGGCGGGATTCTGGCAAGCGAGTACGAAACCGGTGAACAGTGGGATAAACCCAACGGCTGGGC  >  NC_000913/3670847‑3670991                                                                                                                                                                                                                                                                                                           GTTTCGTACTCGCTTGCCAGAATCCCGCCAGGTGTCAGTAACCGACTGCGCACGGCGTTTGCCAGACGATCGGCCTGTTCATGGTTCGCCATACCGACATAGAGTGGCACAATGGCGGCAGCGGAAAACAGCGCCAGTTGTTCGCGTCG                                                                                                                                                      >  3:669593/1‑149   TTCGTACTCGCTTGCCAGAATCCCGCCAGGTGTCAGTAACCGACTGCGCACGGCGTTTGCCAGACGATCGGCCTGTTCATGGTTCGCCATACCGACATGGAGTGGCACAATGGCGGCAGCGGAAAACAGCGCCAGTTGTTCGCGTCGCC                                                                                                                                                    <  1:372517/149‑1                                                                                                             ACAATGGCGGCAGCGGAAAACAGCGCCAGTTGTTCGCGTCGCCATAGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGACACCTGGCGGGATTCTGGCAAGCGAGT                                          >  3:841282/1‑149                                                                                                              CAATGGCGGCAGCGGAAAACAGCGCCAGTTGTTCGCGTCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGACACCTGGCGGGATTCTGGCAAGCGAGTA                                         <  4:841282/149‑1                                                                                                              CAATGGCGGCAGCGGAAAACAGCGCCAGTTGTTCGCGTCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGAC                                                                    >  1:257672/1‑122                                                                                                              CAATGGCGGCAGCGGAAAACAGCGCCAGTTGTTCGCGTCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGAC                                                                    <  2:257672/122‑1                                                                                                                ATGGCGGCAGCGGAAAACAGCGCCAGTTGTTCGCGTCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGACACCTGGCGGGATTCTGGCAAGCGA                                            >  3:1127828/1‑144                                                                                                                ATGGCGGCAGCGGAAAACAGCGCCAGTTGTTCGCGTCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGACACCTGGCGGGATTCTGGCAAGCGA                                            <  4:1127828/144‑1                                                                                                                                                    CGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGACACCTGGCGGGATTCTGGCAAGCGAGTACGAAACCGGTGAACAGTGGGATAAACCC             <  3:299981/139‑1                                                                                                                                                    CGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGACACCTGGCGGGATTCTGGCAAGCGAGTACGAAACCGGTGAACAGTGGGATAAACCC             >  4:299981/1‑139                                                                                                                                                     GCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGACACCTGGCGGGATTCTGGCAAGCGAGTACGAAACCGGTGAACAGTGGGATAAACCCAACGGCTGGGC  <  3:554288/149‑1                                                                                                                                                      CCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGACACCTGGCGGGATTCTGGCAAGCGAGTACGAAACCGGT                               >  1:1203677/1‑119                                                                                                                                                      CCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGACACCTGGCGGGATTCTGGCAAGCGAGTACGAAACCGGT                               <  2:1203677/119‑1                                                                                                                                                        ATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGACACCTGGCGGGATTCTGGCAAGCGAGTACGAAACCGGTGAAC                           >  1:1313095/1‑121                                                                                                                                                        ATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGACACCTGGCGGGATTCTGGCAAGCGAGTACGAAACCGGTGAAC                           <  2:1313095/121‑1                                                                                                                                                                                                                                                                                                           GTTTCGTACTCGCTTGCCAGAATCCCGCCAGGTGTCAGTAACCGACTGCGCACGGCGTTTGCCAGACGATCGGCCTGTTCATGGTTCGCCATACCGACATAGAGTGGCACAATGGCGGCAGCGGAAAACAGCGCCAGTTGTTCGCGTCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3670958‑3670807 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccaTTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGACACCTGGCGGGATTCTGGCAAGCGAGTACGAAACCGGTGAACAGTGGGATAAACCCAACGGCTGGGC  >  NC_000913/3670847‑3670991

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.