| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3718303 = | 39 (0.280) | 6 (0.050) | 6/208 | NT | 14.3% | intergenic (+19/+31) | ghrB/yiaF | glyoxylate/hydroxypyruvate reductase B/barrier effect co‑colonization resistance factor; DUF3053 family lipoprotein |
| ? | NC_000913 | 3718328 = | 36 (0.280) | intergenic (+44/+6) | ghrB/yiaF | glyoxylate/hydroxypyruvate reductase B/barrier effect co‑colonization resistance factor; DUF3053 family lipoprotein | |||||
AGTACCGCATATTGGATCTGCCACCCATGAGACGCGTTATGGCATGGCCGCCTGTGCCGTGGATAATTTGATTGATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAACGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGAT > NC_000913/3718155‑3718450 | tcaggtgagctttgtcgcaaatggcatccagttcccgacttcacagcaggcaagtgaatataacaaactgattgcgccattaccggcacagcatcaggcgtttaatcaggcctggactacagcagttactgcaacccaataaagagtaa > 2:1287469‑M1/149‑149 (MQ=255) aggtgagctttgtcgcaaatggcatccagttcccgacttcacagcaggcaagtgaatataacaaactgattgcgccattaccggcacagcatcaggcgtttaatcaggcctggactacagcagttactgcaacccaataaagagtaaaa < 1:1250382‑M1/3‑1 (MQ=255) aggtgagctttgtcgcaaatggcatccagttcccgacttcacagcaggcaagtgaatataacaaactgattgcgccattaccggcacagcatcaggcgtttaatcaggcctggactacagcagttactgcaacccaataaagagtaaaa > 3:786923‑M1/147‑149 (MQ=255) ggtgagctttgtcgcaaatggcatccagttcccgacttcacagcaggcaagtgaatataacaaactgattgcgccattaccggcacagcatcaggcgtttaatcaggcctggactacagcagttactgcaacccaataaagagtaAAAg > 3:530662‑M1/146‑149 (MQ=255) gtgagctttgtcgcaaatggcatccagttcccgacttcacagcaggcaagtgaatataacaaactgattgcgccattaccggcacagcatcaggcgtttaatcaggcctggactacagcagttactgcaacccaataaagagtaAAAGc > 1:156454‑M1/145‑149 (MQ=255) ccGCATATTGGATCTGCCACCCATGAGACGCGTTATGGCATGGCCGCCTGTGCCGTGGATAATTTGATTGATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTaaaag > 2:511214/1‑147 (MQ=255) ccGCATATTGGATCTGCCACCCATGAGACGCGTTATGGCATGGCCGCCTGTGCCGTGGATAATTTGATTGATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGc > 3:335495/1‑149 (MQ=255) tgagctttgtcgcaaatggcatccagttcccgacttcacagcaggcaagtgaatataacaaactgattgcgccattaccggcacagcatcaggcgtttaatcaggcctggactacagcagttactgcaacccaataaagagtaaaa < 2:728754‑M1/3‑1 (MQ=255) tgagctttgtcgcaaatggcatccagttcccgacttcacagcaggcaagtgaatataacaaactgattgcgccattaccggcacagcatcaggcgtttaatcaggcctggactacagcagttactgcaacccaataaagagtaaaa > 1:728754‑M1/144‑146 (MQ=255) agctttgtcgcaaatggcatccagttcccgacttcacagcaggcaagtgaatataacaaactgattgcgccattaccggcacagcatcaggcgtttaatcaggcctggactacagcagttactgcaacccaataaagagtaaaa < 3:1293624‑M1/3‑1 (MQ=255) agctttgtcgcaaatggcatccagttcccgacttcacagcaggcaagtgaatataacaaactgattgcgccattaccggcacagcatcaggcgtttaatcaggcctggactacagcagttactgcaacccaataaagagtaaaa > 4:1293624‑M1/142‑144 (MQ=255) gATCTGCCACCCATGAGACGCGTTATGGCATGGCCGCCTGTGCCGTGGATAATTTGATTGATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCg > 2:927891/1‑149 (MQ=255) tGCCACCCATGAGACGCGTTATGGCATGGCCGCCTGTGCCGTGGATAATTTGATTGATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCg < 1:927891/149‑1 (MQ=255) atccagttcccgacttcacagcaggcaagtgaatataacaaactgattgcgccattaccggcacagcatcaggcgtttaatcaggcctggactacagcagttactgcaacccaataaagagtaAAAGCCCGa < 4:1195057‑M1/9‑1 (MQ=255) atccagttcccgacttcacagcaggcaagtgaatataacaaactgattgcgccattaccggcacagcatcaggcgtttaatcaggcctggactacagcagttactgcaacccaataaagagtaAAAGCCCGa > 3:1195057‑M1/124‑132 (MQ=255) aTGAGACGCGTTATGGCATGGCCGCCTGTGCCGTGGATAATTTGATTGATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTa > 2:218778/1‑149 (MQ=255) aCGCGTTATGGCATGGCCGCCTGTGCCGTGGATAATTTGATTGATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTAc > 1:254492/1‑145 (MQ=255) aCGCGTTATGGCATGGCCGCCTGTGCCGTGGATAATTTGATTGATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTAc < 2:254492/145‑1 (MQ=255) aCGCGTTATGGCATGGCCGCCTGTGCCGTGGATAATTTGATTGATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCtt > 4:1192957/1‑149 (MQ=255) ttATGGCATGGCCGCCTGTGCCGTGGATAATTTGATTGATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCttt > 4:779110/1‑137 (MQ=255) ttATGGCATGGCCGCCTGTGCCGTGGATAATTTGATTGATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCttt < 3:779110/137‑1 (MQ=255) ttATGGCATGGCCGCCTGTGCCGTGGATAATTTGATTGATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTg < 3:1192957/149‑1 (MQ=255) tcacagcaggcaagtgaatataacaaactgattgcgccattaccggcacagcatcaggcgtttaatcaggcctggactacagcagttactgcaacccaataaagagtaaaa > 4:82335‑M1/109‑111 (MQ=255) tcacagcaggcaagtgaatataacaaactgattgcgccattaccggcacagcatcaggcgtttaatcaggcctggactacagcagttactgcaacccaataaagagtaaaa < 3:82335‑M1/3‑1 (MQ=255) acagcaggcaagtgaatataacaaactgattgcgccattaccggcacagcatcaggcgtttaatcaggcctggactacagcagttactgcaacccaataaagagtaaaa < 4:1358835‑M1/3‑1 (MQ=255) acagcaggcaagtgaatataacaaactgattgcgccattaccggcacagcatcaggcgtttaatcaggcctggactacagcagttactgcaacccaataaagagtaaaa > 3:1358835‑M1/107‑109 (MQ=255) gccgccTGTGCCGTGGATAATTTGATTGATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTggg > 2:1334898/1‑141 (MQ=255) gccgccTGTGCCGTGGATAATTTGATTGATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTggg < 1:1334898/141‑1 (MQ=255) cgccTGTGCCGTGGATAATTTGATTGATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAAc < 1:218778/149‑1 (MQ=255) gATAATTTGATTGATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAg < 4:335495/149‑1 (MQ=255) aCAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCtt > 1:1318744/1‑91 (MQ=255) aCAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCtt < 2:1318744/91‑1 (MQ=255) aGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAActgctg > 3:1148490/1‑118 (MQ=255) aGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAActgctg < 4:1148490/118‑1 (MQ=255) ggAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAAc < 4:33157/112‑1 (MQ=255) ggAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAAc > 3:33157/1‑112 (MQ=255) gTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAACGCCTGAt > 2:585111/1‑138 (MQ=255) gTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAACGCCTGAt < 1:585111/138‑1 (MQ=255) gagaAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTggg > 1:1056649/1‑93 (MQ=255) gagaAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTggg < 2:1056649/93‑1 (MQ=255) gaagaaCTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTAc > 1:1402331/1‑80 (MQ=255) gaagaaCTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTAc < 2:1402331/80‑1 (MQ=255) gcgtttaatcaggcctggactacagcagttactgcaacccaataaagagtaAAAGCCCGATAATCGCTCGGGCtt < 3:697745‑M1/24‑1 (MQ=255) gcgtttaatcaggcctggactacagcagttactgcaacccaataaagagtaAAAGCCCGATAATCGCTCGGGCtt > 4:697745‑M1/52‑75 (MQ=255) gaaCTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAACGCCTGATGCTGTGCCGGTAATGgcgc > 3:297319/1‑149 (MQ=255) tttaatcaggcctggactacagcagttactgcaacccaataaagagtaAA‑GCCCGATAATCGCTCGGGCTTTTACTCTTTATTggg < 2:1178628‑M1/38‑1 (MQ=255) tttaatcaggcctggactacagcagttactgcaacccaataaagagtaAA‑GCCCGATAATCGCTCGGGCTTTTACTCTTTATTggg > 1:1178628‑M1/49‑86 (MQ=255) tCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAACGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGtt < 4:297319/149‑1 (MQ=255) gCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTaa > 3:323547/1‑106 (MQ=255) gCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTaa < 4:323547/106‑1 (MQ=255) gCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAACGc > 3:1314991/1‑110 (MQ=255) gCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAACGc < 4:1314991/110‑1 (MQ=255) tctcgGACTATTCCGCTATTTCTTAGATTAAAGCCAGCTAATTGCTCGGGTTTTTACTCATTATTTTGTTCTAGTAACTTCTGGAGTCCATGTCTTATTAAACGCCTGATGCTGTGCCGATAATGGCGCAATCAGTTTGTTATATTCAc < 4:1204084/146‑1 (MQ=255) tCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTggg < 1:1151162/68‑1 (MQ=255) tCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTggg > 2:1151162/1‑68 (MQ=255) gcagttactgcaacccaataaagagtaAAAGCCCGATAATCGCTCGGGCTTTTa < 1:1105359‑M1/27‑1 (MQ=255) gcagttactgcaacccaataaagagtaAAAGCCCGATAATCGCTCGGGCTTTTa > 2:1105359‑M1/28‑54 (MQ=255) ggACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAACGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACtaga > 3:1204084/1‑146 (MQ=255) gcgACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAACGc > 3:452220/1‑91 (MQ=255) gcgACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAACGc < 4:452220/91‑1 (MQ=255) aCTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAACGCCTGATGCTGTGCCGGTAATg > 1:1466800/1‑108 (MQ=255) aCTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAACGCCTGATGCTGTGCCGGTAATg < 2:1466800/108‑1 (MQ=255) agTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAACGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCctgct < 4:569552/132‑1 (MQ=255) agTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAACGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCctgct > 3:569552/1‑132 (MQ=255) gTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAACGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTc < 4:1388341/139‑1 (MQ=255) gTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAACGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTc > 3:1388341/1‑139 (MQ=255) gTAAAGCCCGATAATCGCTCGGGCTTTTACTCTCTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAACGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTTAAGTCGGGAACTGGa > 1:833019/1‑149 (MQ=255) tAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAACGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGAt > 2:105015/1‑149 (MQ=255) tAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAACGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGAt < 2:833019/149‑1 (MQ=255) tAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAACGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGAt < 1:105015/149‑1 (MQ=255) AAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAACGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCtgt < 1:746483‑M1/131‑1 (MQ=255) AAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAACGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCtgt > 2:746483‑M1/1‑131 (MQ=255) | AGTACCGCATATTGGATCTGCCACCCATGAGACGCGTTATGGCATGGCCGCCTGTGCCGTGGATAATTTGATTGATGCGTTACAAGGAAAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAACGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGAT > NC_000913/3718155‑3718450 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |