BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4195970	118 (0.850)	6 (0.050)	5/216	NT	5.0%	coding (130/1896 nt)	thiC	phosphomethylpyrimidine synthase
*	?	NC_000913	= 4195986	114 (0.860)	6 (0.050)	5/216	NT	5.0%	coding (114/1896 nt)	thiC	phosphomethylpyrimidine synthase

Only 100 of 165 total aligned reads displayed.

AGCCCTTGCTGCACGTTAATGGCAATCTGCGGATCACCATACGGGCCGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTT  >  NC_000913/4195822‑4196117

aGCCCTTGCTGCACGTTAATGGCAATCTGCGGATCACCATACGGGCCGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCAC                                                                                                                                                     <  2:354067‑M1/149‑1 (MQ=255)

    cTTGCTGCACGTTAATGGCAATCTGCGGATCACCATACGGGCCGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGgcacgcgc                                                                                                                                                 >  1:909627/1‑149 (MQ=255)

     ttGCTGCACGTTAATGGCAATCTGCGGATCACCATACGGGCCGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGgcacgcgca                                                                                                                                                >  3:1393987/1‑149 (MQ=255)

           cACGTTAATGGCAATCTGCGGATCACCATACGGGCCGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCgg                                                                                                                                          >  4:516410/1‑149 (MQ=255)

            aCGTTAATGGCAATCTGCGGATCACCATACGGGCCGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCgg                                                                                                                                          <  3:281575/148‑1 (MQ=255)

            aCGTTAATGGCAATCTGCGGATCACCATACGGGCCGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCgg                                                                                                                                          >  4:281575/1‑148 (MQ=255)

              gTTAATGGCAATCTGCGGATCACCATACGGGCCGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGgt                                                                                                                                       <  4:569171/149‑1 (MQ=255)

                  aTGGCAATCTGCGGATCACCATACGGGCCGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTgt                                                                                                                                   >  4:695204‑M2/1‑147 (MQ=255)

                    ggCAATCTGCGGATCACCATACGGGCCGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTgtgc                                                                                                                                 <  2:1374159‑M2/149‑5 (MQ=255)

                      cAATCTGCGGATCACCATACGGGCCGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCa                                                                                                                               <  3:495242/149‑1 (MQ=255)

                                   aCCATACGGGCCGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGc                                                                                                                  >  1:549390/1‑149 (MQ=255)

                                     cATACGGGCCGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGt                                                                                                                <  2:549390/149‑1 (MQ=255)

                                      aTACGGGCCGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGtt                                                                                                               >  1:1454461/1‑149 (MQ=255)

                                       tACGGGCCGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGttt                                                                                                              >  2:454165/1‑149 (MQ=255)

                                        aCGGGCCGGAGGTATCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGtttt                                                                                                             <  2:481711/149‑1 (MQ=255)

                                              cGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCTCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTg                                                                                                       <  2:99435/149‑1 (MQ=255)

                                               ggAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTgt                                                                                                                                   <  4:963406‑M2/120‑3 (MQ=255)

                                               ggAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTgg                                                                                                      <  4:1294020/149‑1 (MQ=255)

                                                 aGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTgg                                                                                                      <  4:873408/147‑1 (MQ=255)

                                                   gtgtCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGaaa                                                                                                  <  2:316915/149‑1 (MQ=255)

                                                    tgtCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGc                                                                                                                  >  4:494538/1‑132 (MQ=255)

                                                     gtCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGtttt                                                                                                             >  3:973449/1‑136 (MQ=255)

                                                        gTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCgg                                                                                             >  1:1458552/1‑149 (MQ=255)

                                                           gACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGc                                                                                          <  2:1458552/149‑1 (MQ=255)

                                                            aCCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGt                                                                                            <  2:906191/146‑1 (MQ=255)

                                                            aCCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGcc                                                                                         >  1:349726/1‑149 (MQ=255)

                                                            aCCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGcc                                                                                         >  2:1104324/1‑149 (MQ=255)

                                                              cGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATaaa                                                                                                                     <  2:770599/119‑1 (MQ=255)

                                                                 aaTCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAGGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGttt                                                                                                              >  4:1077012/1‑123 (MQ=255)

                                                                 aaTCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGttt                                                                                                              <  3:1077012/123‑1 (MQ=255)

                                                                  aTCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAg                                                                                   <  3:577270/149‑1 (MQ=255)

                                                                   tCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACacaccccggcgtgcgcgtgccgatg                                                                                                                            >  1:1022589‑M1/1‑82 (MQ=255)

                                                                   tCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAgg                                                                                  >  4:655516/1‑149 (MQ=255)

                                                                   tCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAgg                                                                                  <  1:454165/149‑1 (MQ=255)

                                                                     gCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACacaccccggcgtgcgcgtgc                                                                                                                                 <  1:55259‑M1/100‑21 (MQ=255)

                                                                      cTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCggg                                                                                                                                         >  4:372871/1‑91 (MQ=255)

                                                                      cTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCggg                                                                                                                                         <  3:372871/91‑1 (MQ=255)

                                                                      cTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGt                                                                                                                             >  2:1342095/1‑103 (MQ=255)

                                                                      cTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGt                                                                                                                             <  1:1342095/103‑1 (MQ=255)

                                                                      cTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGgtg                                                                               >  3:1269806/1‑149 (MQ=255)

                                                                       ttCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGgtgt                                                                              >  3:1110686/1‑149 (MQ=255)

                                                                       ttCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGgtgt                                                                              >  3:1335366/1‑149 (MQ=255)

                                                                        tCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGt                                                                                                         <  1:1260648/121‑1 (MQ=255)

                                                                        tCGATTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGt                                                                                                         >  2:1260648/1‑121 (MQ=255)

                                                                          gTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGgtgt                                                                              >  3:480/1‑146 (MQ=255)

                                                                           ttttCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGat                                                                                                                          <  1:673127/101‑1 (MQ=255)

                                                                           ttttCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGAt                                                                          >  2:277204/1‑149 (MQ=255)

                                                                           ttttCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGAt                                                                          >  3:245318/1‑149 (MQ=255)

                                                                             ttcttcGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATaa                                                                        <  2:1454461/149‑1 (MQ=255)

                                                                               cttcGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATaaaa                                                                      <  3:516410/149‑1 (MQ=255)

                                                                                ttcGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATaaa                                                                                                                     >  4:1439844/1‑101 (MQ=255)

                                                                                ttcGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGgt                                                                                >  4:1461683/1‑138 (MQ=255)

                                                                                ttcGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAAt                                                                     >  1:1115723/1‑149 (MQ=255)

                                                                                   gTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGtt                                                                  <  1:277204/149‑1 (MQ=255)

                                                                                   gTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGtt                                                                  <  3:1376491/149‑1 (MQ=255)

                                                                                    tACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTTGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATaaaa                                                                      <  1:1276792/144‑1 (MQ=255)

                                                                                    tACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTTGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATaaaa                                                                      >  2:1276792/1‑144 (MQ=255)

                                                                                    tACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTg                                                                 <  4:245318/149‑1 (MQ=255)

                                                                                           gCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAgg                                                                                  <  2:176258/125‑1 (MQ=255)

                                                                                           gCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAgg                                                                                  >  1:176258/1‑125 (MQ=255)

                                                                                           gCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGgt                                                                                >  4:1377562/1‑127 (MQ=255)

                                                                                            cTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAgg                                                                                  >  4:79661/1‑124 (MQ=255)

                                                                                            cTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAgg                                                                                  <  3:79661/124‑1 (MQ=255)

                                                                                               ttCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGgcgc                                                      >  3:241356/1‑149 (MQ=255)

                                                                                                  tttGCTACCGCCAATTAGCGTCGGGCTAGGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAAGCGGTGCCTTCCAGGGTGTCGATaaaa                                                                      >  1:78884/1‑130 (MQ=255)

                                                                                                  tttGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTgtgc                                                                                                                                 <  1:136197‑M2/71‑5 (MQ=255)

                                                                                                  tttGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTgtgc                                                                                                                                 >  2:136197‑M2/1‑67 (MQ=255)

                                                                                                  tttGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTgtgc                                                                                                                                 <  1:74538‑M2/71‑5 (MQ=255)

                                                                                                  tttGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATaaaa                                                                      <  2:78884/130‑1 (MQ=255)

                                                                                                  tttGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCgtt                                                   <  4:1335366/149‑1 (MQ=255)

                                                                                                  tttGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCgtt                                                   <  4:1110686/149‑1 (MQ=255)

                                                                                                       tACCGCCAATTAGCGTCGGGCTAAGCTGGATCTGACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGAAAAGGCGGTGCCTTCCAGGGTGTAGATAAAATGTTGGGCCCGGGCGCGTTGTTcg                                              >  1:416494/1‑149 (MQ=255)

                                                                                                           gCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACacaccccggcgtgcgcgtgc                                                                                                                                 <  3:697723‑M1/62‑21 (MQ=255)

                                                                                                           gCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACacaccccggcgtgcgcgtgc                                                                                                                                 >  4:697723‑M1/1‑42 (MQ=255)

                                                                                                           gCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTgtgc                                                                                                                                 >  4:1269801‑M2/1‑58 (MQ=255)

                                                                                                            ccAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGgt                                                                                                                                       <  1:885859/55‑1 (MQ=255)

                                                                                                                         ggCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTttgtt                            <  1:1104324/149‑1 (MQ=255)

                                                                                                                            tAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCa                         >  3:1385253/1‑149 (MQ=255)

                                                                                                                                cTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGtt                                                                  <  2:1362834/104‑1 (MQ=255)

                                                                                                                                cTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGtt                                                                  >  1:1362834/1‑104 (MQ=255)

                                                                                                                                 tGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGCCAggcgatc                             >  2:657708/1‑134 (MQ=255)

                                                                                                                                 tGGATCTAACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGCCAggcgatc                             <  1:657708/140‑7 (MQ=255)

                                                                                                                                   gATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGcggcgg                                        <  1:281328/127‑1 (MQ=255)

                                                                                                                                   gATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGcggcgg                                        >  2:281328/1‑127 (MQ=255)

                                                                                                                                       tcACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAg                                                                                                 <  2:1044189/66‑1 (MQ=255)

                                                                                                                                         aCGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCAtt            >  3:1192850/1‑149 (MQ=255)

                                                                                                                                           gCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTgg                                                                >  1:1096629/1‑95 (MQ=255)

                                                                                                                                            cATCGGCACGCGCACGCCGGGGTGTgtgccgatgcgtgagatccagcttagcccgacgctaattggcggtagcaaagaacagccgcagtacgaagaaaacgaagcga                                                   >  1:1022589‑M2/1‑25 (MQ=255)

                                                                                                                                            cATCGGCACGCGCACGCCGGGGTGTgtgccgatgcgtgagatccagcttagcccgacgctaattggcggtagcaaagaacagccgcagtacgaagaaaacgaagcga                                                   <  2:1022589‑M2/107‑83 (MQ=255)

                                                                                                                                                 gcacgcgcacgcCGGGGTGTgtgccgatgcgtgagatccagcttagcccgacgctaattggcggtagcaaagaacagccgcagtacgaagaaaacgaagc                                                     >  2:55259‑M2/1‑20 (MQ=255)

                                                                                                                                                 gcacgcgcacgcCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCa                                    >  3:739291/1‑117 (MQ=255)

                                                                                                                                                 gcacgcgcacgcCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCa                                    <  4:739291/117‑1 (MQ=255)

                                                                                                                                                 gcacgcgcacgcCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAg    >  3:1440735/1‑149 (MQ=255)

                                                                                                                                                 gCACacaccccggcgtgcgcgtgccgatgcgtgagatccagcttagcccgacgctaattggcggtagcaaagaacagccgcagtacgaagaaaacgaagcgattccggtctacgacacctccggcccgtatggtgatccgcagattgcc    <  1:1424433‑M1/149‑146 (MQ=255)

                                                                                                                                                 gCACacaccccggcgtgcgcgtgccgatgcgtgagatccagcttagcccgacgctaattggcggtagcaaa                                                                                  >  2:74538‑M1/1‑4 (MQ=255)

                                                                                                                                                 gCACacaccccggcgtgcgcgtgccgatgcgtgagatccagcttagcccgacgctaattggc                                                                                           >  4:1269801‑M1/1‑4 (MQ=255)

                                                                                                                                                 gCACacaccccggcgtgcgcgtgccgatgcgtgagatccagcttagcccgacgctaattggc                                                                                           <  3:1269801‑M1/62‑59 (MQ=255)

                                                                                                                                                   acacaccccggcgtgcgcgtgccgatgcgtgagatccagcttagcccgacgctaattggcggtagcaaagaacagccgcagtacgaagaaaacgaagcgattccggtctacgacacctcc                               >  3:963406‑M1/1‑2 (MQ=255)

                                                                                                                                                   acacaccccggcgtgcgcgtgccgatgcgtgagatccagcttagcccgacgctaattggcggt                                                                                        >  2:441380‑M1/1‑2 (MQ=255)

                                                                                                                                                   acacaccccggcgtgcgcgtgccgatgcgtgagatccagcttagcccgacgctaattggcggt                                                                                        <  1:441380‑M1/63‑62 (MQ=255)

AGCCCTTGCTGCACGTTAATGGCAATCTGCGGATCACCATACGGGCCGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTT  >  NC_000913/4195822‑4196117

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.