BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4195970	118 (0.850)	6 (0.050)	5/216	NT	5.0%	coding (130/1896 nt)	thiC	phosphomethylpyrimidine synthase
*	?	NC_000913	= 4195986	114 (0.860)	6 (0.050)	5/216	NT	5.0%	coding (114/1896 nt)	thiC	phosphomethylpyrimidine synthase

Only 100 of 149 total aligned reads displayed.

TAATGGCAATCTGCGGATCACCATACGGGCCGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCA  >  NC_000913/4195838‑4196134

tAATGGCAATCTGCGGATCACCATACGGGCCGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGgtgt                                                                                                                                                      <  2:909627/149‑1 (MQ=255)

  aTGGCAATCTGCGGATCACCATACGGGCCGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTgt                                                                                                                                                    >  4:695204‑M2/1‑147 (MQ=255)

    ggCAATCTGCGGATCACCATACGGGCCGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTgtgc                                                                                                                                                  <  2:1374159‑M2/149‑5 (MQ=255)

      cAATCTGCGGATCACCATACGGGCCGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCa                                                                                                                                                <  3:495242/149‑1 (MQ=255)

                    ccATACGGGCCGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTAACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCg                                                                                                                                  >  3:1294020/1‑149 (MQ=255)

                     cATACGGGCCGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGt                                                                                                                                 <  2:549390/149‑1 (MQ=255)

                     cATACGGGCCGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGt                                                                                                                                 <  4:1393987/149‑1 (MQ=255)

                      aTACGGGCCGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGtt                                                                                                                                >  2:316135/1‑149 (MQ=255)

                      aTACGGGCCGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGtt                                                                                                                                >  1:1454461/1‑149 (MQ=255)

                      aTACGGGCCGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGtt                                                                                                                                >  1:215437/1‑149 (MQ=255)

                       tACGGGCCGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGttt                                                                                                                               >  2:454165/1‑149 (MQ=255)

                        aCGGGCCGGAGGTATCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGtttt                                                                                                                              <  2:481711/149‑1 (MQ=255)

                              cGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCTCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTg                                                                                                                        <  2:99435/149‑1 (MQ=255)

                               ggAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTgt                                                                                                                                                    <  4:963406‑M2/120‑3 (MQ=255)

                               ggAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTgt                                                                                                                                                    >  3:963406‑M2/1‑118 (MQ=255)

                               ggAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTgg                                                                                                                       <  4:1294020/149‑1 (MQ=255)

                                 aGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTgg                                                                                                                       <  4:873408/147‑1 (MQ=255)

                                    tgtCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGc                                                                                                                                   <  3:494538/132‑1 (MQ=255)

                                    tgtCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGc                                                                                                                                   >  4:494538/1‑132 (MQ=255)

                                     gtCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGtttt                                                                                                                              >  3:973449/1‑136 (MQ=255)

                                       cGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCg                                                                                                               <  4:514969/149‑1 (MQ=255)

                                        gTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCgg                                                                                                              >  1:1458552/1‑149 (MQ=255)

                                           gACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGc                                                                                                           <  2:1458552/149‑1 (MQ=255)

                                            aCCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGcc                                                                                                          >  2:1104324/1‑149 (MQ=255)

                                                 aaTCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCCCGCATCGGCACGCGCACGCCGGGGTGTGTGCAAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCa                                                                                                     <  4:766717/149‑1 (MQ=255)

                                                 aaTCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCa                                                                                                     <  1:1374159/149‑1 (MQ=255)

                                                  aTCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAg                                                                                                    <  2:215437/149‑1 (MQ=255)

                                                  aTCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAg                                                                                                    <  3:577270/149‑1 (MQ=255)

                                                   tCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAgg                                                                                                   >  4:655516/1‑149 (MQ=255)

                                                   tCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAgg                                                                                                   <  1:454165/149‑1 (MQ=255)

                                                      cTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGt                                                                                                                                              <  1:1342095/103‑1 (MQ=255)

                                                      cTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGt                                                                                                                                              >  2:1342095/1‑103 (MQ=255)

                                                      cTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGc                                                                                                                                   <  4:1094434/114‑1 (MQ=255)

                                                      cTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGc                                                                                                                                   >  3:1094434/1‑114 (MQ=255)

                                                       ttCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGgtgt                                                                                               >  3:1110686/1‑149 (MQ=255)

                                                       ttCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGgtgt                                                                                               >  3:1335366/1‑149 (MQ=255)

                                                        tCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGt                                                                                                                          <  1:1260648/121‑1 (MQ=255)

                                                        tCGATTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGt                                                                                                                          >  2:1260648/1‑121 (MQ=255)

                                                           ttttCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGat                                                                                                                                           >  2:673127/1‑101 (MQ=255)

                                                           ttttCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTg                                                                                                                        >  1:4921/1‑120 (MQ=255)

                                                           ttttCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGAt                                                                                           >  3:245318/1‑149 (MQ=255)

                                                             ttcttcGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATaa                                                                                         <  2:1454461/149‑1 (MQ=255)

                                                                ttcGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGgt                                                                                                 <  3:1461683/138‑1 (MQ=255)

                                                                ttcGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGgt                                                                                                 >  4:1461683/1‑138 (MQ=255)

                                                                ttcGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAAt                                                                                      >  1:1115723/1‑149 (MQ=255)

                                                                    tACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTTGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATaaaa                                                                                       <  1:1276792/144‑1 (MQ=255)

                                                                    tACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTg                                                                                  <  4:245318/149‑1 (MQ=255)

                                                                         cGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGccc                                                                             <  1:316135/149‑1 (MQ=255)

                                                                           gCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAgg                                                                                                   <  2:176258/125‑1 (MQ=255)

                                                                           gCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAgg                                                                                                   >  1:176258/1‑125 (MQ=255)

                                                                           gCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGgt                                                                                                 >  4:1377562/1‑127 (MQ=255)

                                                                           gCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGgt                                                                                                 <  3:1377562/127‑1 (MQ=255)

                                                                            cTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAgg                                                                                                   <  3:79661/124‑1 (MQ=255)

                                                                                tCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGcgcg                                                                      <  2:1336422/149‑1 (MQ=255)

                                                                                  tttGCTACCGCCAATTAGCGTCGGGCTAGGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAAGCGGTGCCTTCCAGGGTGTCGATaaaa                                                                                       >  1:78884/1‑130 (MQ=255)

                                                                                  tttGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTgtgc                                                                                                                                                  >  2:74538‑M2/1‑67 (MQ=255)

                                                                                  tttGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTgtgc                                                                                                                                                  <  1:136197‑M2/71‑5 (MQ=255)

                                                                                  tttGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTgtgc                                                                                                                                                  <  1:74538‑M2/71‑5 (MQ=255)

                                                                                  tttGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATaaaa                                                                                       <  2:78884/130‑1 (MQ=255)

                                                                                  tttGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCgtt                                                                    <  4:1110686/149‑1 (MQ=255)

                                                                                  tttGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCgtt                                                                    <  4:1335366/149‑1 (MQ=255)

                                                                                    tGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCgttgt                                                                  <  3:655516/149‑1 (MQ=255)

                                                                                       tACCGCCAATTAGCGTCGGGCTAAGCTGGATCTGACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGAAAAGGCGGTGCCTTCCAGGGTGTAGATAAAATGTTGGGCCCGGGCGCGTTGTTcg                                                               >  1:416494/1‑149 (MQ=255)

                                                                                          cGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCgcgg                                                            >  2:394278/1‑149 (MQ=255)

                                                                                           gCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTgtgc                                                                                                                                                  >  4:1269801‑M2/1‑58 (MQ=255)

                                                                                           gCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTgtgc                                                                                                                                                  <  3:1269801‑M2/62‑5 (MQ=255)

                                                                                               aTTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGtt                                                                                                                         >  3:265259/1‑83 (MQ=255)

                                                                                               aTTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGtt                                                                                                                         <  4:265259/83‑1 (MQ=255)

                                                                                                         ggCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTttgtt                                             >  2:1212295/1‑149 (MQ=255)

                                                                                                            tAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCa                                          >  3:1385253/1‑149 (MQ=255)

                                                                                                                cTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGtt                                                                                   <  2:1362834/104‑1 (MQ=255)

                                                                                                                 tGGATCTAACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGCCAggcgatc                                              <  1:657708/140‑7 (MQ=255)

                                                                                                                   gATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGcggcgg                                                         <  1:281328/127‑1 (MQ=255)

                                                                                                                   gATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGcggcgg                                                         >  2:281328/1‑127 (MQ=255)

                                                                                                                       tcACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAg                                                                                                                  >  1:1044189/1‑66 (MQ=255)

                                                                                                                       tcACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAg                                                                                                                  <  2:1044189/66‑1 (MQ=255)

                                                                                                                         aCGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCAtt                             >  3:1192850/1‑149 (MQ=255)

                                                                                                                           gCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTgg                                                                                 >  1:1096629/1‑95 (MQ=255)

                                                                                                                            cATCGGCACGCGCACGCCGGGGTGTgtgccgatgcgtgagatccagcttagcccgacgctaattggcggtagcaaagaacagccgcagtacgaagaaaacgaagcga                                                                    >  1:1022589‑M2/1‑25 (MQ=255)

                                                                                                                            cATCGGCACGCGCACGCCGGGGTGTgtgccgatgcgtgagatccagcttagcccgacgctaattggcggtagcaaagaacagccgcagtacgaagaaaacgaagcga                                                                    <  2:1022589‑M2/107‑83 (MQ=255)

                                                                                                                             aTCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCaa                         >  1:1114578/1‑149 (MQ=255)

                                                                                                                                 gcacgcgcacgcCGGGGTGTgtgccgatgcgtgagatccagcttagcccgacgctaattggcggtagcaaagaacagccgcagtacgaagaaaacgaagc                                                                      >  2:55259‑M2/1‑20 (MQ=255)

                                                                                                                                 gcacgcgcacgcCGGGGTGTgtgccgatgcgtgagatccagcttagcccgacgctaattggcggtagcaaagaacagccgcagtacgaagaaaacgaagc                                                                      <  1:55259‑M2/100‑81 (MQ=255)

                                                                                                                                 gcacgcgcacgcCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCa                                                     >  3:739291/1‑117 (MQ=255)

                                                                                                                                 gcacgcgcacgcCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCa                                                     <  4:739291/117‑1 (MQ=255)

                                                                                                                                 gcacgcgcacgcCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAg                     >  3:1440735/1‑149 (MQ=255)

                                                                                                                                   acgcgcacgcCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGtt                   <  1:394278/149‑1 (MQ=255)

                                                                                                                                   acgcgcacgcCGGGATGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGtt                   >  3:307120/1‑149 (MQ=255)

                                                                                                                                     gcgcacgcCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTaa                 <  4:307120/149‑1 (MQ=255)

                                                                                                                                             cGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAGGACGTgg         <  4:1192850/149‑1 (MQ=255)

                                                                                                                                               gggTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATaaaa                                                                                       <  1:793157/69‑1 (MQ=255)

                                                                                                                                               gggTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATaaaa                                                                                       >  2:793157/1‑69 (MQ=255)

                                                                                                                                                ggTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAGGACGTGGCtt      <  2:349726/149‑1 (MQ=255)

                                                                                                                                                 gtgtgtGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTg                                                                                  <  1:733328/72‑1 (MQ=255)

                                                                                                                                                 gtgtgtGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTg                                                                                  >  2:733328/1‑72 (MQ=255)

                                                                                                                                                 gtgtgtGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTttgt                                              <  4:344455/108‑1 (MQ=255)

                                                                                                                                                 gtgtgtGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTttgt                                              >  3:344455/1‑108 (MQ=255)

                                                                                                                                                 gtgtgtGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAGGACGTGGCTTg     >  1:1413705/1‑149 (MQ=255)

                                                                                                                                                   gtgtgCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAGGACGTGGCTTGTc   <  2:1114578/149‑1 (MQ=255)

                                                                                                                                                    tgtgCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCa  <  4:1440735/149‑1 (MQ=255)

TAATGGCAATCTGCGGATCACCATACGGGCCGGAGGTGTCGTAGACCGGAATCGCTTCGTTTTCTTCGTACTGCGGCTGTTCTTTGCTACCGCCAATTAGCGTCGGGCTAAGCTGGATCTCACGCATCGGCACGCGCACGCCGGGGTGTGTGCCAGTGATATAAATGCGTTTTGAGTTGGGAAAGGCGGTGCCTTCCAGGGTGTCGATAAAATGTTGGGCCCGGGCGCGTTGTTCGCGGCGGGTCAGTTTTGTTGCAGACATAGCTCATTCCAAAAAGTTAAGGACGTGGCTTGTCA  >  NC_000913/4195838‑4196134

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.