New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3811200 =164 (1.190)21 (0.170) 15/202 NT 15.5% intergenic (‑48/+50) mutM/rpmG formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33
?NC_000913 3811236 = 82 (0.670)intergenic (‑84/+14) mutM/rpmG formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33

Only 100 of 169 total aligned reads displayed.

GTTGCACCAACGAGATGCGGTTCTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGAAA  >  NC_000913/3811088‑3811383
                                                                                                                                                     |                                                                                                                                                    
 ttGCACCAACGAGATGCGGTTCTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACa                                                                                                                                                     >  4:153487/1‑149 (MQ=255)
    cACCAACGAGATGCGGTTCTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCa                                                                                                                                                  >  2:702186/1‑149 (MQ=255)
       cAACGAGATGCGGTTCTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAg                                                                                                                                               >  2:1005564/1‑149 (MQ=255)
          cGAGATGCGGTTCTATGCCGCGGCGGCTGGTTTCAACTTCGTGTAATTCAGGCATAGCATCTCCAGGAATGAACAGCTGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCga                                                                                                                                            <  4:1199716/149‑1 (MQ=255)
           gagaTGCGGTTCTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACa                                                                                                                                                     >  1:91197/1‑139 (MQ=255)
              aTGCGGTTCTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAat                                                                                                                                        <  1:702186/149‑1 (MQ=255)
                   gTTCTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAattatt                                                                                                                                    <  2:1329312/148‑1 (MQ=255)
                   gTTCTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAAGGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAattatt                                                                                                                                    >  1:1329312/1‑148 (MQ=255)
                       tATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACa                                                                                                                                                     <  1:1164267/127‑1 (MQ=255)
                                    ttgttttAAACTTGGGTTAATCCAGCAATACCATCCCAAGAAAGAAACGGTGGCATTAAATTT‑GGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTa                                                                                                                <  2:1458892/145‑1 (MQ=255)
                                    cTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGt                                                                                                                 >  2:1211985/1‑149 (MQ=255)
                                    cTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGt                                                                                                                 <  1:1005564/149‑1 (MQ=255)
                                       gTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAg                                                                                                                                               <  4:771767/117‑1 (MQ=255)
                                        tttCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTAttt                                                                                                                                   <  4:1024716/128‑1 (MQ=255)
                                        tttCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATAT‑GGGGCCAGCAGGTTACAAAAAACCCCGCCCGAACGGGGGTTTTTTGTTACATCAAACGGAGAATAATTGGATTTT‑GCTTCCTTTGtgggg                                                                                                             >  1:1458892/1‑145 (MQ=255)
                                              cTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAattatt                                                                                                                                    <  1:841643/121‑1 (MQ=255)
                                               ttCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGc                                                                                                      >  2:1424724/1‑149 (MQ=255)
                                                   ggTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAattatt                                                                                                                                    <  4:40917/116‑1 (MQ=255)
                                                   ggTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAattatt                                                                                                                                    >  3:40917/1‑116 (MQ=255)
                                                     tAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCga                                                                                                                          <  1:88549/124‑2 (MQ=255)
                                                     tAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGc                                                                                                                          >  2:88549/1‑124 (MQ=255)
                                                        ttCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCaaa                                                                                                                                                >  1:616265/1‑99 (MQ=255)
                                                        ttCAGGCATAGCATCTCCAGGAATGAACAGATGCAATCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCaaa                                                                                                                                                <  2:616265/99‑1 (MQ=255)
                                                          cAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGAt                                                                                                             >  1:45424/1‑131 (MQ=255)
                                                           aGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACt                                                                                          <  1:1211985/149‑1 (MQ=255)
                                                             gCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTAc                                                                                                                                                      >  1:609323/1‑88 (MQ=255)
                                                             gCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTAc                                                                                                                                                      <  2:609323/88‑1 (MQ=255)
                                                               aTAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGAt                                                                                      <  3:457621/149‑1 (MQ=255)
                                                               aTAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGAAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGAt                                                                                      <  1:141407/149‑1 (MQ=255)
                                                                  gCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTAttt                                                                                                                                   >  4:824434/1‑102 (MQ=255)
                                                                  gCATCTCCAGGAATGAACAGATGCAGTCAATATGGAGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTAttt                                                                                                                                   <  3:824434/102‑1 (MQ=255)
                                                                    aTCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGaa                                                                                               <  3:127150/135‑1 (MQ=255)
                                                                     tctcCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAattat                                                                                                                                     <  4:644683/97‑1 (MQ=255)
                                                                     tctcCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAattat                                                                                                                                     >  3:644683/1‑97 (MQ=255)
                                                                         cAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGc                                                                                                      >  3:1112302/1‑123 (MQ=255)
                                                                         cAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGc                                                                                                      <  4:1112302/123‑1 (MQ=255)
                                                                          aGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGAt                                                                                      >  3:1061519/1‑138 (MQ=255)
                                                                             aaTGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGt                                                                                                                 >  1:576844/1‑108 (MQ=255)
                                                                             aaTGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGt                                                                                                                 <  2:576844/108‑1 (MQ=255)
                                                                                      aTGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGaa                                                                                                                                         >  2:408484/1‑76 (MQ=255)
                                                                                      aTGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGaa                                                                                                                                         <  1:408484/76‑1 (MQ=255)
                                                                                           gTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGctt‑ct                                                                                                                     <  2:597009/90‑1 (MQ=255)
                                                                                           gTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGctt‑ct                                                                                                                     >  1:597009/1‑90 (MQ=255)
                                                                                                tatGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGctt‑ctt                                                                                                                    <  3:1075867/86‑1 (MQ=255)
                                                                                                  tGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAattatt                                                                                                                                    >  3:213763/1‑69 (MQ=255)
                                                                                                  tGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAattatt                                                                                                                                    <  4:213763/69‑1 (MQ=255)
                                                                                                  tGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGt                                                                                                        >  1:176947/1‑96 (MQ=255)
                                                                                                    ggggCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACg                                                 >  2:1125704/1‑149 (MQ=255)
                                                                                                     gggCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGAt                                                                                      <  2:850465/111‑1 (MQ=255)
                                                                                                                   CAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAAtt                                                                                <  1:989380‑M1/103‑1 (MQ=255)
                                                                                                                   CAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAAtt                                                                                >  2:989380‑M1/1‑103 (MQ=255)
                                                                                                                    AAAAAACCTCGCTCCGGC‑GGGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGt                                                                  >  4:129001‑M1/1‑116 (MQ=255)
                                                                                                                    AAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGctt‑c                                                                                                                      <  2:194380‑M1/64‑1 (MQ=255)
                                                                                                                    AAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGaac                                                                                              <  1:310579‑M1/88‑1 (MQ=255)
                                                                                                                    AAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGaac                                                                                              >  2:310579‑M1/1‑88 (MQ=255)
                                                                                                                    AAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAAtttttt                                                                            >  3:89797‑M1/1‑106 (MQ=255)
                                                                                                                    AAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAAtttttt                                                                            <  4:89797‑M1/106‑1 (MQ=255)
                                                                                                                    AAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCgg                                                          >  3:1337518‑M1/1‑124 (MQ=255)
                                                                                                                    AAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGttt                                              >  2:479658‑M1/1‑136 (MQ=255)
                                                                                                                    AAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTa                                    <  3:577936‑M1/146‑1 (MQ=255)
                                                                                                                    AAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTa                                    >  4:577936‑M1/1‑146 (MQ=255)
                                                                                                                     aaaaaacctcgctccggcggggttttttgttaCATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGtt                                           >  3:368248‑M2/33‑139 (MQ=255)
                                                                                                                     aaaaaacctcgctccggcggggttttttgttaCATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGtt                                           <  4:368248‑M2/107‑1 (MQ=255)
                                                                                                                      aaaaacctcgctccggcggggttttttgttaCATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTa                                                                                                                <  2:806431‑M2/38‑1 (MQ=255)
                                                                                                                      aaaaacctcgctccggcggggttttttgttaCATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTgg                                >  3:1406537‑M2/32‑149 (MQ=255)
                                                                                                                      AAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTg                                                                                                    <  4:106504‑M1/80‑1 (MQ=255)
                                                                                                                      AAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGt                               <  1:1448285‑M1/149‑1 (MQ=255)
                                                                                                                        aaacctcgctccggcggggttttttgttaCATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAg                                                                                                               >  1:1131718‑M2/30‑68 (MQ=255)
                                                                                                                        aaacctcgctccggcggggttttttgttaCATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTa                                    >  2:1211206‑M2/30‑143 (MQ=255)
                                                                                                                         aacctcgctccggcggggttttttgttaCATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCTAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGttt                                              <  2:958874‑M2/104‑1 (MQ=255)
                                                                                                                         aacctcgctccggcggggttttttgttaCATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGaac                                                                                              <  2:52841‑M2/56‑1 (MQ=255)
                                                                                                                         aacctcgctccggcggggttttttgttaCATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGaac                                                                                              >  1:52841‑M2/29‑84 (MQ=255)
                                                                                                                         aacctcgctccggcggggttttttgttaCATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGa                                                                                       >  4:1324827‑M2/29‑91 (MQ=255)
                                                                                                                         aacctcgctccggcggggttttttgttaCATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGa                                                                                       <  3:1324827‑M2/63‑1 (MQ=255)
                                                                                                                          acctcgctccggcggggttttttgttaCATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGtt                                           >  4:1451393‑M2/28‑134 (MQ=255)
                                                                                                                          acctcgctccggcggggttttttgttaCATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGtt                                           <  3:1451393‑M2/107‑1 (MQ=255)
                                                                                                                           CCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGa                          <  1:1015707‑M1/149‑1 (MQ=255)
                                                                                                                           CCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGa                          <  3:692329‑M1/149‑1 (MQ=255)
                                                                                                                            ccgccgGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCAc                                                                                                          >  3:771791/1‑68 (MQ=255)
                                                                                                                            ccgccgGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGaa                         <  2:1448285/149‑1 (MQ=255)
                                                                                                                              gccgGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGt                                                >  3:365276/1‑124 (MQ=255)
                                                                                                                              cgctccggcggggttttttgttaCATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTa                                    >  4:17382‑M2/24‑137 (MQ=255)
                                                                                                                              cgctccggcggggttttttgttaCATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTa                                    <  3:17382‑M2/114‑1 (MQ=255)
                                                                                                                               gctccggcggggttttttgttaCATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGt                       <  4:1406537‑M2/127‑1 (MQ=255)
                                                                                                                                cgGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGa                     <  2:658943/149‑1 (MQ=255)
                                                                                                                                       gAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAAtttttt                                                                            <  1:888244/88‑1 (MQ=255)
                                                                                                                                        aGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTc                                                                      >  3:993916/1‑93 (MQ=255)
                                                                                                                                          gttttttgttaCATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATc                                                                                     >  4:490141‑M2/12‑76 (MQ=255)
                                                                                                                                          gttttttgttaCATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTACAGAAGTGACCAGTACca            >  1:115014‑M2/12‑149 (MQ=255)
                                                                                                                                           ttttttgttaCATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTg                                             <  4:770949‑M2/105‑1 (MQ=255)
                                                                                                                                           ttttttgttaCATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTg                                             >  3:770949‑M2/11‑115 (MQ=255)
                                                                                                                                           ttttttgttaCATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGaa                         <  2:893694‑M2/125‑1 (MQ=255)
                                                                                                                                           ttttttgttaCATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAg                        >  2:1133928‑M2/11‑136 (MQ=255)
                                                                                                                                             ttttgttaCATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGAc                    >  4:366029‑M2/9‑138 (MQ=255)
                                                                                                                                                tgttaCATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGt                       >  2:68178‑M2/6‑132 (MQ=255)
                                                                                                                                                tgttaCATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGt                       <  1:68178‑M2/127‑1 (MQ=255)
                                                                                                                                                 gttaCATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACcag           >  3:1464115‑M2/5‑143 (MQ=255)
                                                                                                                                                  ttaCATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCagaaga    >  3:71135‑M2/4‑149 (MQ=255)
                                                                                                                                                   taCATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCa                                                                    >  3:1180944‑M2/3‑84 (MQ=255)
                                                                                                                                                    aCATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTAcc             >  4:1128396‑M2/2‑138 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
GTTGCACCAACGAGATGCGGTTCTATGCCGCGGCGGCTGGTTTCAACTTCGGGTAATTCAGGCATAGCATCTCCAGGAATGAACAGATGCAGTCAATATGGGGGCAAGCAGATAACAAAAAACCCCGCCGGAGC‑GAGGTTTTTTGTTACATCAAAGCGAGAATTATTTGATTTTCGCTT‑CTTTGTAGATCACGTGCTGGCGAACAACTGGATCGAATTTTTTCAGTTCCAGTTTTTCCGGCTTAGTACGTTTGTTCTTCGTAGTGGTATAGAAGTGACCAGTACCAGCAGAAGAAA  >  NC_000913/3811088‑3811383

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.