New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4424908 =	86 (1.140)	4 (0.050)	4/250	NT	4.9%	intergenic (‑117/‑210)	yjfY/rpsF	YhcN family protein, periplasmic/30S ribosomal subunit protein S6
	?	NC_000913	4424949 =	72 (0.990)					intergenic (‑158/‑169)	yjfY/rpsF	YhcN family protein, periplasmic/30S ribosomal subunit protein S6
Rejected: Frequency below/above cutoff threshold.

GGCAAGGAACGTGTTAAAGGTCGGCTGAAAAATGACGCGTTATAGTACTTGTATGCCTCGCTAAACTCAAGGGCAGAGCCGAAATAAATCTCCCCTTTCGCAATTAACCTCTAACACGCTGATTTGAAGTTCATCACACTTCATCATGGTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4425060‑4424908 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgttAGAGGTTAATTGCGAAAGGGGAGATTTATTTCGGCTCTGCCCTTGAGTTTAGCGAGGCATACAAGTACTATAACGCGTCATTTTTCAGCCGACCTTTAACACGTTCCTTGCCTCCCCGGGATTCGGCTGACCCAGACAGGAGGCTGAA  >  NC_000913/4424949‑4425096                                                                                                                                                                                                                                                                                                               GGCAAGGAACGTGTTAAAGGTCGGCTGAAAAATGACGCGTTATAGTACTTGTATGCCTCGCTAAACTCAAGGGCAGAGCCGAAATAAATCTCCCCTTTCGCAATTAACCTCTAACACGCTGATTTGAAGTTCATCACACTTCATCATGG                                                                                                                                                          <  3:415192/149‑1                                                                                                           ACCTCTAACACGCTGATTTGAAGTTCATCACACTTCATCATGGTGTTAGAGGTTAATTGCGAAAGGGGAGATTTATTTCGGCTCTGCCCTTGAGTTTAGCGAGGCATACAAGTACTATAACGCGTCATTTTTCAGCCGACCTTTAACA                                                 >  1:97902/1‑148                                                                                                           ACCTCTAACACGCTGATTTGAAGTTCATCACACTTCATCATGGTGTTAGAGGTTAATTGCGAAAGGGGAGATTTATTTCGGCTCTGCCCTTGAGTTTAGCGAGGCATACAAGTACTATAACGCGTCATTTTTCAGCCGACCTTTAACA                                                 <  2:97902/148‑1                                                                                                            CCTCTAACACGCTGATTTGAAGTTCATCACACTTCATCATGGTGTTAGAGGTTAATTGCGAAAGGGGAGATTTATTTCGGCTCTGCCCTTGAGTTTAGCGAGGCATACAAGTACTATAACGCGTCATTTTTCAGCCGACCTTTAACACG                                               >  2:459847/1‑149                                                                                                                                          ACTTCATCATGGTGTTAGAGGTTAATTGCGAAAGGGGAGATTTATTTCGGCTCTGCCCTTGAGTTTAGCGAGGCATACAAGTACTATAACGCGTCATTTTTCAGCCGACCTTTAACACGTTCCTTGCCTCCCCGGGATTCGGCTGACCC                 <  1:459847/149‑1                                                                                                                                                        TTAGAGGTTAATTGCGAAAGGGGAGATTTATTTCGGCTCTGCCCTTGAGTTTAGCGAGGCATACAAGTACTATAACGCGTCATTTTT                                                                 <  3:332789/87‑1                                                                                                                                                        TTAGAGGTTAATTGCGAAAGGGGAGATTTATTTCGGCTCTGCCCTTGAGTTTAGCGAGGCATACAAGTACTATAACGCGTCATTTTT                                                                 >  4:332789/1‑87                                                                                                                                                         TAGAGGTTAATTGCGAAAGGGGAGATTTATTTCGGCTCTGCCCTTGAGTTTAGCGAGGCATACAAGTACTATAACGCGTCATTTTTCAGCCGACCTTTAACACGTTCCTTGCCTCCCCGTTATTCGGCTGACCCAGACAGGAGGCTGAA  <  2:378392/149‑1                                                                                                                                                                                                                                                                                                               GGCAAGGAACGTGTTAAAGGTCGGCTGAAAAATGACGCGTTATAGTACTTGTATGCCTCGCTAAACTCAAGGGCAGAGCCGAAATAAATCTCCCCTTTCGCAATTAACCTCTAACACGCTGATTTGAAGTTCATCACACTTCATCATGGTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4425060‑4424908 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgttAGAGGTTAATTGCGAAAGGGGAGATTTATTTCGGCTCTGCCCTTGAGTTTAGCGAGGCATACAAGTACTATAACGCGTCATTTTTCAGCCGACCTTTAACACGTTCCTTGCCTCCCCGGGATTCGGCTGACCCAGACAGGAGGCTGAA  >  NC_000913/4424949‑4425096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.