New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3360184	72 (0.730)	4 (0.040)	3/250	NT	5.5%	coding (987/1419 nt)	gltD	glutamate synthase, 4Fe‑4S protein, small subunit
	?	NC_000913	= 3360201	69 (0.740)					coding (1004/1419 nt)	gltD	glutamate synthase, 4Fe‑4S protein, small subunit

ACGAACCGTTCGTCAGCATGGAAGGCAAACGCGTGGTGGTCCTTGGCGGTGGCGACACTGCGATGGACTGCGTGCGTACGTCCGTGCGCCAGGGAGCGAAGCACGTTACCTGTGCCTATCGTCGTGATGAAGAGAACATGCCGGGTTC‑‑‑CCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3360033‑3360184 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttc‑‑‑ccgcGCGTTTTTCACTTCGCGGCGGGAACCCGGCATGTTCTCTTCATCACGACGATAGGCACAGGTAACGTGCTTCGCTCCCTGGCGCACGGACGTACGCACGCAGTCCATCGCAGTGTCGCCACCGCCAAGGACCACCACGCGTTTGCCTT  <  NC_000913/3360201‑3360054                                                                                                                                                                                                                                                                                                                 ACGAACCGTTCGTCAGCATGGAAGGCAAACGCGTGGTGGTCCTTGGCGGTGGCGACACTGCGATGGACTGCGTGCGTACGTCCGTGCGCCAGGGAGCGAAGCACGTTACCTGTGCCTATCGTCGTGATGAAGAGAACATGCCGGGTTC‑‑‑C                                                                                                                                                         >  1:708958/1‑149                           AAACGCGTGGTGGTCCTTGGCGGTGGCGACACTGCGATGGACTGCGTGCGTACGTCCGTGCGCCAGGGAGCGAAGCACGTTACCTGTGCCTATCGTCGTGATGAAGAGAACATGCCGGGTTCCCGCCGCGCGTTTTTCACTTCGCGGCG                                                                                                                                  <  2:869665/149‑1                                    GTGGTCCTTGGCGGTGGCGACACTGCGATGGACTGCGTGCGTACGTCCGTGCGCCAGGGAGCGAAGCACGTTACCTGTGCCTATCGTCGTGATGAAGAGAACATGCCGGGTTC‑‑‑CCGCGCGTTTTTCACTTCGCGGCGGGAACCCGGCAT                                                                                                                      <  4:104746/149‑1                                                                                            GGGAGCGAAGCACGTTACCTGTGCCTATCGTCGTGATGAAGAGAACATGCCGGGTTC‑‑‑CCGCGCGTTTTTCACTTCGCGGCG                                                                                                                                  >  3:175851/1‑81                                                                                            GGGAGCGAAGCACGTTACCTGTGCCTATCGTCGTGATGAAGAGAACATGCCGGGTTC‑‑‑CCGCGCGTTTTTCACTTCGCGGCG                                                                                                                                  <  4:175851/81‑1                                                                                                                                                   TC‑‑‑CCGCGCGTTTTTCACTTCGCGGCGGGAACCCGGCATGTTCTCTTCATCACGACGATAGGCACAGGTAACGTGCTTCGCTCCCTGGCGCACGGACGTACGCACGCAGTCCATCGCAGTGTCGCCACCGCCAAGGACCACCACGCGTTT       <  1:554843/149‑1                                                                                                                                                   TC‑‑‑CCGCGCGTTTTTCACTTCGCGGCGGGAACCCGGCATGTTCTCTTCATCACGACGATAGGCACAGGTAACGTGCTTCGCTCCCTGGCGCACGGACGTACGCACGCAGTCCATCGCAGTGTCGCCACCGCCAAGGACCACCACGCGTTT       <  1:699075/149‑1                                                                                                                                                         CGCGCGTTTTTCACTTCGCGGCGGGAACCCGGCATGTTCTCTTCATCACGACGATAGGCACAGGTAACGTGCTTCGCTCCCTGGCGCACGGACGTACGCACGCAGTCCATCGCAGTGTCGCCACCGCCAAGGACCACCACGCGTTTGCC    <  1:465002/149‑1                                                                                                                                                          GCGCGTTTTTCACTTCGCGGCGGGAACCCGGCATGTTCTCTTCATCACGACGATAGGCACAGGTAACGTGCTTCGCTCCCTGGCGCACGGACGTACGCACGCAGTCCATCGCAGTGTCGCCACCGCCAAGGACCACCACGCGTTTGCCT   <  1:545548/149‑1                                                                                                                                                           CGCGTTTTTCACTTCGCGGCGGGAACCCGGCATGTTCTCTTCATCACGACGATAGGCACAGGTAACGTGCTTCGCTCCCTGGCGCACGGACGTACGCACGCAGTCCATCGCAGTGTCGCCACCGCCAAGGACCACCACGCGTTTGCCTT  >  3:378659/1‑149                                                                                                                                                                                                                                                                                                                 ACGAACCGTTCGTCAGCATGGAAGGCAAACGCGTGGTGGTCCTTGGCGGTGGCGACACTGCGATGGACTGCGTGCGTACGTCCGTGCGCCAGGGAGCGAAGCACGTTACCTGTGCCTATCGTCGTGATGAAGAGAACATGCCGGGTTC‑‑‑CCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3360033‑3360184 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttc‑‑‑ccgcGCGTTTTTCACTTCGCGGCGGGAACCCGGCATGTTCTCTTCATCACGACGATAGGCACAGGTAACGTGCTTCGCTCCCTGGCGCACGGACGTACGCACGCAGTCCATCGCAGTGTCGCCACCGCCAAGGACCACCACGCGTTTGCCTT  <  NC_000913/3360201‑3360054

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.