mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 54 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 235 (0.980) | 44 (0.190) | 37/484 | 6.1 | 17.6% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 191 (0.850) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 256 (1.060) | 48 (0.210) | 30/484 | 7.6 | 18.2% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 192 (0.850) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 66613 | 177 (0.740) | 10 (0.050) | 6/416 | 15.0 | 6.5% | noncoding (49/248 nt) | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | 66784 = | 146 (0.750) | noncoding (220/248 nt) | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913 | 4516891 = | 242 (1.010) | 6 (0.030) | 6/498 | 16.7 | 2.5% | coding (827/954 nt) | fecR | anti‑sigma transmembrane signal transducer for ferric citrate transport; periplasmic FecA‑bound ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator |
| ? | NC_000913 | 4516925 = | 241 (1.040) | coding (793/954 nt) | fecR | anti‑sigma transmembrane signal transducer for ferric citrate transport; periplasmic FecA‑bound ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator | |||||
| * | ? | NC_000913 | 3484544 = | 223 (0.930) | 8 (0.030) | 6/496 | 16.7 | 3.5% | coding (55/870 nt) | prkB | putative phosphoribulokinase |
| ? | NC_000913 | = 3484540 | 222 (0.960) | coding (51/870 nt) | prkB | putative phosphoribulokinase | |||||
| * | ? | NC_000913 | = 3880655 | 250 (1.040) | 6 (0.030) | 5/496 | 17.4 | 2.5% | coding (567/1074 nt) | recF | gap repair protein |
| ? | NC_000913 | = 3880717 | 227 (0.980) | coding (505/1074 nt) | recF | gap repair protein | |||||
| * | ? | NC_000913 | = 2304500 | 127 (0.530) | 3 (0.020) | 3/424 | 17.4 | 2.3% | noncoding (84/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | 2305066 = | 150 (0.760) | noncoding (650/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913 | 4295832 = | NA (NA) | 6 (0.030) | 3/438 | 17.8 | NA | intergenic (+38/+604) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296394 | NA (NA) | noncoding (560/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | = 3726014 | 968 (4.020) | 6 (0.020) | 5/516 | 17.8 | 0.62% | coding (128/996 nt) | wecH | O‑acetyltransferase for enterobacterial common antigen (ECA) |
| ? | NC_000913 | 3726018 = | 953 (3.960) | coding (132/996 nt) | wecH | O‑acetyltransferase for enterobacterial common antigen (ECA) | |||||
| * | ? | NC_000913 | = 3750926 | 786 (3.340) | 21 (0.090) +GAGCA |
4/494 | 18.1 | 2.6% | pseudogene (9/192 nt) | ysaD | pseudogene, internal sequence remnant |
| ? | NC_000913 | 3750927 = | 809 (3.360) | pseudogene (10/192 nt) | ysaD | pseudogene, internal sequence remnant | |||||