Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
MC JC	NC_000913	3,993,337	Δ11 bp	100%	coding (2185‑2195/2547 nt)	cyaA →	adenylate cyclase

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3993337	3993347	11	100 [0]	[0] 99	cyaA	adenylate cyclase

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3993336	0 (0.000)	90 (1.060)	69/264	NT	100%	coding (2184/2547 nt)	cyaA	adenylate cyclase
	?	NC_000913	3993348 =	0 (0.000)					coding (2196/2547 nt)	cyaA	adenylate cyclase

TGCGCGTTTCTGGTCAAACCTGGGGGTTGTTCTTCGAACGCCTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAATTACCGGCGGTGGTGGACGGCTTTGCCAGCGAAGGGATCATCCAGTTCTTTTTCGAAGAAACGCAAGACGAGAATGGCTTTAATATCTACATTCTCGACGAAAGCAACCGGGTTGAGGTATATCACCACTGCGAAGGCAGCAAAGAGG  >  NC_000913/3993188‑3993484                                                                                                                                                     |                                                                                                                                                     tGCGCGTTTCTGGTCAAACCTGGGGGTTGTTCTTCGAACGCCTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCaaa                                                                                                                                                      <  4:247553/149‑1 (MQ=255)    gcgTTTCTGGTCAAACCTGGGGGTTGTTCTTCGAACGCCTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggt                                                                                                                                                   <  4:607430‑M1/149‑4 (MQ=255)      gTTTCTGGTCAAACCTGGGGGTTGTTCTTCGAACGCCTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtgg                                                                                                                                                 <  2:241514‑M1/149‑6 (MQ=255)          cTGGTCAAACCTGGGGGTTGTTCTTCGAACGCCTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacgg                                                                                                                                             >  3:586748‑M1/1‑140 (MQ=255)            ggTCAAACCTGGGGGTTGTTCTTCGAACGCCTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggct                                                                                                                                           <  1:432321‑M1/149‑12 (MQ=255)             gTCAAACCTGGGGGTTGTTCTTCGAACGCCTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctt                                                                                                                                          >  2:318729‑M1/1‑137 (MQ=255)             gTCAAACCTGGGGGTTGTTCTTCGAACGCCTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctt                                                                                                                                          >  3:717284‑M1/1‑137 (MQ=255)              tCAAACCTGGGGGTTGTTCTTCGAACGCCTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAtgtggacggcttt                                                                                                                                         >  4:517794‑M1/1‑136 (MQ=255)              tCAAACCTGGGGGTTGTTCTTCGAACGCCTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggcttt                                                                                                                                         >  4:281213‑M1/1‑136 (MQ=255)              tCAAACCTGGGGGTTGTTCTTCGAACGCCTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggcttt                                                                                                                                         <  1:390282‑M1/149‑14 (MQ=255)              tCAAACCTGGGGGTTGTTCTTCGAACGCCTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggcttt                                                                                                                                         <  4:705565‑M1/149‑14 (MQ=255)              tCAAACCTGGGGGTTGTTCTTCGAACGCCTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggcttt                                                                                                                                         <  1:165074‑M1/149‑14 (MQ=255)              tCAAACCTGGGGGTTGTTCTTCGAACGCCTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtg                                                                                                                                                  <  3:741960‑M1/140‑5 (MQ=255)              tCAAACCTGGGGGTTGTTCTTCGAACGCCTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtg                                                                                                                                                  >  4:741960‑M1/1‑136 (MQ=255)                aaaCCTGGGGGTTGTTCTTCGAACGCCTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgc                                                                                                                                       >  1:202484‑M1/1‑134 (MQ=255)                aaaCCTGGGGGTTGTTCTTCGAACGCCTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgc                                                                                                                                       <  4:499476‑M1/149‑16 (MQ=255)                    cTGGGGGTTGTTCTTCGAACGCCTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccag                                                                                                                                    >  3:23235‑M1/1‑130 (MQ=255)                    cTGGGGGTTGTTCTTCGAACGCCTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccag                                                                                                                                    <  4:23235‑M1/148‑19 (MQ=255)                          gttgttCTTCGAACGCCTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtgggcggctttgccagcgaaggg                                                                                                                             <  3:598416‑M1/149‑26 (MQ=255)                          gttgttCTTCGAACGCCTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaaggg                                                                                                                             <  4:505901‑M1/149‑26 (MQ=255)                           ttgttCTTCGAACGCCTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaaggga                                                                                                                            <  1:394199‑M1/149‑27 (MQ=255)                           ttgttCTTCGAACGCCTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaaggga                                                                                                                            <  4:276975‑M1/149‑27 (MQ=255)                             gttCTTCGAACGCCTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatc                                                                                                                          >  4:747366‑M1/1‑121 (MQ=255)                             gttCTTCGAACGCCTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatc                                                                                                                          <  1:517162‑M1/149‑29 (MQ=255)                                     aaCGCCTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagtt                                                                                                                  >  1:572829‑M1/1‑113 (MQ=255)                                        gCCTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctt                                                                                                               <  1:349073‑M1/149‑40 (MQ=255)                                          cTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatc                                                                                                                          >  1:671723‑M1/1‑108 (MQ=255)                                          cTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatc                                                                                                                          <  2:671723‑M1/136‑29 (MQ=255)                                           tGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttcttttt                                                                                                            <  4:239358‑M1/149‑43 (MQ=255)                                           tGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttcttttt                                                                                                            <  3:709518‑M1/149‑43 (MQ=255)                                             aaTGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTTAAAggtggacggctttgccagcgaagggatcatccagttctttttcg                                                                                                          <  3:517794‑M1/149‑45 (MQ=255)                                               tGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaa                                                                                                        <  2:707889‑M1/149‑47 (MQ=255)                                               tGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaa                                                                                                        <  4:54419‑M1/149‑47 (MQ=255)                                               tGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaa                                                                                                        <  4:216759‑M1/149‑47 (MQ=255)                                                   tCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaa                                                                                                    <  4:510074‑M1/149‑51 (MQ=255)                                                   tCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggaacatccagttctttttcgaagaaa                                                                                                    <  4:355794‑M1/149‑51 (MQ=255)                                                      gTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTAAAACCAATCACGTCAAAg                                                                                                                                                     >  3:596515‑M1/1‑96 (MQ=255)                                                      gTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTAAAACCAATCACGTCAAAg                                                                                                                                                     <  4:596515‑M1/97‑2 (MQ=255)                                                        aCAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaa                                                                                               >  3:430807‑M1/1‑94 (MQ=255)                                                        aCAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaa                                                                                               <  2:693130‑M1/149‑56 (MQ=255)                                                          aGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaaga                                                                                             >  4:24305‑M1/1‑92 (MQ=255)                                                          aGAAACTAGAAAACGCAATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGCAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaaga                                                                                             <  4:558235‑M1/149‑58 (MQ=255)                                                           gAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagac                                                                                            <  2:572829‑M1/149‑59 (MQ=255)                                                            aaaCTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacg                                                                                           >  1:591605‑M1/1‑90 (MQ=255)                                                            aaaCTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaaggga                                                                                                                            <  3:588150‑M1/116‑27 (MQ=255)                                                            aaaCTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaaggga                                                                                                                            >  4:588150‑M1/1‑90 (MQ=255)                                                               cTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgaga                                                                                        >  4:189247‑M1/1‑87 (MQ=255)                                                                tGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggct                                                                                                                                           >  2:64087‑M1/1‑86 (MQ=255)                                                                tGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggct                                                                                                                                           <  1:64087‑M1/97‑12 (MQ=255)                                                                 ggAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaat                                                                                      >  1:324669‑M1/1‑85 (MQ=255)                                                                  gAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatg                                                                                     >  2:152299‑M1/1‑84 (MQ=255)                                                                   aaaaCGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatgg                                                                                    >  2:465728‑M1/1‑83 (MQ=255)                                                                      aCGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctt                                                                                 <  2:695361‑M1/149‑70 (MQ=255)                                                                       cGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggcttt                                                                                <  1:152299‑M1/149‑71 (MQ=255)                                                                         ccATCGAGTTTTATGGCTCGATTTCGCATAACAAGCTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaa                                                                              <  1:72098‑M1/149‑73 (MQ=255)                                                                         ccATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaa                                                                              <  1:318729‑M1/149‑73 (MQ=255)                                                                          cATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaat                                                                             <  1:560958‑M1/149‑74 (MQ=255)                                                                                 ttttATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctaca                                                                      >  1:695780‑M1/1‑69 (MQ=255)                                                                                         cgcgATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgac                                                              >  2:540762‑M1/1‑61 (MQ=255)                                                                                            gATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaa                                                           <  3:592595‑M1/149‑92 (MQ=255)                                                                                             aTTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaa                                                          <  4:714027‑M1/149‑93 (MQ=255)                                                                                             aTTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaa                                                          <  3:747366‑M1/149‑93 (MQ=255)                                                                                              tttCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaag                                                         >  4:11014‑M1/1‑56 (MQ=255)                                                                                                  gCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaagcaac                                                     <  3:281213‑M1/149‑98 (MQ=255)                                                                                                  gCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaagcaac                                                     >  4:525135‑M1/1‑52 (MQ=255)                                                                                                  gCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattc                                                                   <  1:179515‑M1/135‑84 (MQ=255)                                                                                                  gCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattc                                                                   >  2:179515‑M1/1‑52 (MQ=255)                                                                                                    aTAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaa                                                          >  1:131363‑M1/1‑50 (MQ=255)                                                                                                    aTAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaa                                                          <  2:131363‑M1/142‑93 (MQ=255)                                                                                                     tAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaagcaaccgg                                                  <  2:528835‑M1/149‑101 (MQ=255)                                                                                                      aaCAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaagcaaccggg                                                 <  2:560256‑M1/149‑102 (MQ=255)                                                                                                        cAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaagcaaccgggtt                                               >  1:757374‑M1/1‑46 (MQ=255)                                                                                                        cAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctc                                                                 >  3:663650‑M1/1‑46 (MQ=255)                                                                                                        cAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctc                                                                 <  4:663650‑M1/131‑86 (MQ=255)                                                                                                         aaaCTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaagcaaccgggttg                                              >  2:735905‑M1/1‑45 (MQ=255)                                                                                                          aaCTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaagcaaccgggttga                                             <  1:25406‑M1/149‑106 (MQ=255)                                                                                                             tGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaagcaaccgggttgaggt                                          <  4:294652‑M1/149‑109 (MQ=255)                                                                                                               cACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaagcaaccgggttgaggtat                                        <  2:324669‑M1/149‑111 (MQ=255)                                                                                                                aCGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaagcaaccgggttgaggtata                                       <  4:27025‑M1/149‑112 (MQ=255)                                                                                                                   gCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtgacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaagcaaccgggttgaggtatatcac                                    >  3:654831‑M1/1‑35 (MQ=255)                                                                                                                     cTGTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaagcaaccgggttgaggtatatcacc                                  >  2:473625‑M1/1‑33 (MQ=255)                                                                                                                       gTCAGTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaagcaaccgggttgaggtatatcaccac                                <  3:227560‑M1/149‑119 (MQ=255)                                                                                                                           gTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaa                                                                                       >  3:592773‑M1/1‑27 (MQ=255)                                                                                                                           gTGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaa                                                                                       <  4:592773‑M1/90‑64 (MQ=255)                                                                                                                            tGCAGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaagcaaccgggttgaggtatatcaccactgcga                           >  1:382103‑M1/1‑26 (MQ=255)                                                                                                                               aGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaagcaaccgggttgaggtatatcaccactgcgaagg                        <  2:382103‑M1/149‑127 (MQ=255)                                                                                                                               aGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaat                                                                                      <  4:720318‑M1/87‑65 (MQ=255)                                                                                                                               aGGTTGAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaat                                                                                      >  3:720318‑M1/1‑23 (MQ=255)                                                                                                                                    gAAACCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaagcaaccgggttgaggtatatcaccactgcgaaggcagca                   >  1:768388‑M1/1‑18 (MQ=255)                                                                                                                                       aCCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttt                                                                                                             >  2:153094‑M1/1‑15 (MQ=255)                                                                                                                                       aCCAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttt                                                                                                             <  1:153094‑M1/56‑42 (MQ=255)                                                                                                                                        ccAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaagcaaccgggttgaggtatatcaccactgcgaaggcagcaaaga               <  2:143070‑M1/149‑136 (MQ=255)                                                                                                                                        ccAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaagcaaccgggttgaggtatatcaccactgcgaaggcagcaaaga               <  1:428781‑M1/149‑136 (MQ=255)                                                                                                                                         cAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaagcaaccgggttgaggtatatcaccactgcgaaggcagcaaagag              >  3:176933‑M1/1‑13 (MQ=255)                                                                                                                                         cAATCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaagcaaccgggttgaggtatatcaccactgcgaaggcagcaaagag              >  1:491100‑M1/1‑13 (MQ=255)                                                                                                                                          aaTCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaagcaaccgggttgaggtatatcaccactgcgaaggcagcaaagagg             >  2:460754‑M1/1‑12 (MQ=255)                                                                                                                                           aTCACGTCAAAggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaagcaaccgggttgaggtatatcaccactgcgaaggcagcaaagagga            <  2:757374‑M1/149‑139 (MQ=255)                                                                                                                                                   aaaggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaagcaaccgggttgaggtagatcaccactgcgaaggcagcaaagaggagctggtac    <  4:717284‑M1/149‑147 (MQ=255)                                                                                                                                                     aggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaagcaaccgggttgaggtatgtcaccactgcgaaggcagcaaagaggagctggtacgt  <  1:506333‑M1/149‑149 (MQ=255)                                                                                                                                                     aggtggacggctttgccagcgaagggatcatccagttctttttcgaagaaacgcaagacgagaatggctttaatatctacattctcgacgaaagcaaccgggttgaggtatatcaccactgcgaaggcagcaaagaggagctggtacgt  <  3:24305‑M1/149‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TGCGCGTTTCTGGTCAAACCTGGGGGTTGTTCTTCGAACGCCTGAATGTATCGGTACAGAAACTGGAAAACGCCATCGAGTTTTATGGCGCGATTTCGCATAACAAACTGCACGGCCTGTCAGTGCAGGTTGAAACCAATCACGTCAAATTACCGGCGGTGGTGGACGGCTTTGCCAGCGAAGGGATCATCCAGTTCTTTTTCGAAGAAACGCAAGACGAGAATGGCTTTAATATCTACATTCTCGACGAAAGCAACCGGGTTGAGGTATATCACCACTGCGAAGGCAGCAAAGAGG  >  NC_000913/3993188‑3993484

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑