New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1243874	60 (0.930)	5 (0.080)	5/250	NT	8.2%	coding (654/735 nt)	ycgR	flagellar velocity braking protein, c‑di‑GMP‑regulated
	?	NC_000913	= 1243902	55 (0.880)					coding (626/735 nt)	ycgR	flagellar velocity braking protein, c‑di‑GMP‑regulated

AAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1243725‑1243874 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgtcTGAGCTTCCGTTTTCTTAACGTCAGCCCGACGGTGGAGCGGCAATTACAGCGGATTATTTTCTCTCTCGAGCGAGAAGCCCGGGAAAAAGCGGACAAAGTGCGCGACTGATTTACATCGCGTCCAGTGCCTGCTCAAGTTTGTA  <  NC_000913/1243902‑1243759                                                                                                                                                                                                                                                                                                        AAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGT                                                                                                                                                   >  4:36215/1‑149                                   TACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCTGAGCTTCCGTTTTCTTAACGTCAGCCCGACGG                                                                                                                 <  1:15366/149‑1                                    ACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCTGAGCTTCCGTTTTCTTAACGTCAGCCCGACGGT                                                                                                                >  2:248528/1‑149                                     CAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCTGAGCTTCCGTTTTCTTAACGTCAGCCCGACGGTG                                                                                                               <  1:248528/149‑1                                                                                        GCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCTGCTCTACCGTCTGAGCTTCCGTTTTCTTAACGTCAGC                                                                                                                        <  4:325470/89‑1                                                                                        GCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCTACCGTCTGAGCTTCCGTTTTCTTAACGTCAGC                                                                                                                        >  3:325470/1‑89                                                                                                                                                  CCGTCTGAGCTTCCGTTTTCTTAACGTCAGCCCGACGGTGGAGCGGCAATTACAGCGGATTATTTTCTCTCTCGAGCGAGAAGCCCGGGAAAAAGCGGACAAAGTGCGCGACTGATTTACATCGCGTCCAGTGCCTGCTCAAGTTTGTA  <  2:205403/149‑1                                                                                                                                                  CCGTCTGAGCTTCCGTTTTCTTAACGTCAGCCCGACGGTGGAGCGGCAATTACAGCGGATTATTTTCTCTCTCGAGCGAGAAGCCCGGGAAAAAGCGGACAAAGTGCGCGACTGATTTACATCGCGTCCAGTGCCTGCTCAAGTTTGTA  <  2:516269/149‑1                                                                                                                                                  CCGTCTGAGCTTCCGTTTTCTTAACGTCAGCCCGACGGTGGAGCGGCAATTACAGCGGATTATTTTCTCTCTCGAGCGAGAAGCCCGGGAAAAAGCGGACAAAGTGCGCGACTGATTTACATCGCGTCCAGTGCCTGCTCAAGTTTGTA  <  3:246435/149‑1                                                                                                                                                  CCGTCTGAGCTTCCGTTTTCTTAACGTCAGCCCGACGGTGGAGCGGCAATTACAGCGGATTATTTTCTCTCTCGAGCGAGAAGCCCGGGAAAAAGCGGACAAAGTGCGCGACTGATTTACATCGCGTCCAGTGCCTGCTCAAGTTTGTA  <  4:77670/149‑1                                                                                                                                                                                                                                                                                                        AAATCACCCTGCGCCGCAGGCTCCGCGCTATATCTACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1243725‑1243874 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgtcTGAGCTTCCGTTTTCTTAACGTCAGCCCGACGGTGGAGCGGCAATTACAGCGGATTATTTTCTCTCTCGAGCGAGAAGCCCGGGAAAAAGCGGACAAAGTGCGCGACTGATTTACATCGCGTCCAGTGCCTGCTCAAGTTTGTA  <  NC_000913/1243902‑1243759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.