New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1243874	60 (0.930)	5 (0.080)	5/250	NT	8.2%	coding (654/735 nt)	ycgR	flagellar velocity braking protein, c‑di‑GMP‑regulated
	?	NC_000913	= 1243902	55 (0.880)					coding (626/735 nt)	ycgR	flagellar velocity braking protein, c‑di‑GMP‑regulated

TACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCCTTCTTGTAATTCGGCAG  >  NC_000913/1243759‑1244049                                                                                                                                                |                                                                                                                                                    tACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAgacgg                                                                                                                                                <  4:77670‑M2/149‑6 (MQ=255) tACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAgacgg                                                                                                                                                <  2:205403‑M2/149‑6 (MQ=255) tACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAgacgg                                                                                                                                                <  2:516269‑M2/149‑6 (MQ=255) tACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAgacgg                                                                                                                                                <  3:246435‑M2/149‑6 (MQ=255)  aCAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACggg                                                                                                                                               >  2:85092/1‑149 (MQ=255)  aCAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACggg                                                                                                                                               >  2:451062/1‑149 (MQ=255)  aCAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACggg                                                                                                                                               >  3:362864/1‑149 (MQ=255)  aCAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACggg                                                                                                                                               <  3:63470/149‑1 (MQ=255)  aCAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCATTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACggg                                                                                                                                               <  3:505616/149‑1 (MQ=255)          gAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAgtggtg                                                                                                                                       >  1:41677/1‑149 (MQ=255)            gCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGAt                                                                                                                                     <  4:47392/149‑1 (MQ=255)             cAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATg                                                                                                                                    <  2:593819/149‑1 (MQ=255)               ggCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGt                                                                                                                                  >  1:218341/1‑149 (MQ=255)                  aCTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTc                                                                                                                               >  2:295696/1‑149 (MQ=255)                     ggACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCAtt                                                                                                                            <  2:198792/149‑1 (MQ=255)                       aCGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCt                                                                                                                          <  3:169530/149‑1 (MQ=255)                           gATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCa                                                                                                                              <  1:553220/141‑1 (MQ=255)                           gATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCa                                                                                                                              >  2:553220/1‑141 (MQ=255)                             tGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCat                                                                                                                    >  1:197466/1‑149 (MQ=255)                              gTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCatc                                                                                                                   >  1:162506/1‑149 (MQ=255)                                aaaTCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCatcaa                                                                                                                 >  4:6230/1‑149 (MQ=255)                                aaaTCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCatcaa                                                                                                                 >  1:586513/1‑149 (MQ=255)                                  aTCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCatcaatc                                                                                                               >  3:548878/1‑149 (MQ=255)                                       tCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACttt                                                                                                          <  1:85092/149‑1 (MQ=255)                                           gcACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTACCATCAATCACTTTgcgc                                                                                                      >  2:293003/1‑149 (MQ=255)                                            cACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGcgct                                                                                                     >  2:241506/1‑149 (MQ=255)                                                  gTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGa                                                                                               <  2:480499/149‑1 (MQ=255)                                                   tCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGGTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGAt                                                                                              >  2:438899/1‑149 (MQ=255)                                                    ccGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATg                                                                                             <  3:55032/149‑1 (MQ=255)                                                       cTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGgag                                                                                          <  1:114652/149‑1 (MQ=255)                                                        tttttCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGgaga                                                                                         <  3:6230/149‑1 (MQ=255)                                                              ccGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACt                                                                                   >  2:39513/1‑149 (MQ=255)                                                                gggCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTgg                                                                                 <  1:451062/149‑1 (MQ=255)                                                                           tcgAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTg                                                                      <  2:148316/149‑1 (MQ=255)                                                                              agagagaAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGaaa                                                                   <  2:250904/149‑1 (MQ=255)                                                                                agagaAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGaaaaa                                                                 >  4:427917/1‑149 (MQ=255)                                                                                 gagaAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAac                                                                >  3:415740/1‑149 (MQ=255)                                                                                      aataatCCGCTGTAATTGCCGCTCAACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACAcccc                                                           >  1:140693/1‑149 (MQ=255)                                                                                        taatCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCAt                                                         >  4:266671/1‑149 (MQ=255)                                                                                         aatCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCAtt                                                        <  3:36215/149‑1 (MQ=255)                                                                                           tCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGc                                                      >  1:353764/1‑149 (MQ=255)                                                                                             cGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGccc                                                    <  3:266671/149‑1 (MQ=255)                                                                                                 gTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATg                                                >  4:451602/1‑149 (MQ=255)                                                                                                   aaTTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGtt                                              <  4:246435/149‑1 (MQ=255)                                                                                                     ttGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGATTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGa                                            <  2:105974/149‑1 (MQ=255)                                                                                                           cTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCaa                                      <  2:290897/149‑1 (MQ=255)                                                                                                            tCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAAt                                     <  3:451602/149‑1 (MQ=255)                                                                                                            tCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAAt                                     <  2:353764/149‑1 (MQ=255)                                                                                                             ccACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGga                                                                                           <  2:241688/94‑1 (MQ=255)                                                                                                             ccACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGga                                                                                           >  1:241688/1‑94 (MQ=255)                                                                                                              cACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAgacggtggagcggcaattacagcggattattttctctctcgagcgagaagcccgggaaaaagcggacaaagtgcgcgactgatttacatcgcgtccagtgcctgctcaagtttg                                   <  1:248528‑M2/149‑115 (MQ=255)                                                                                                               aCCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAgacggtggagcggcaattacagcggattattttctctctcgagcgagaagcccgggaaaaagcggacaaagtgcgcgactgatttacatcgcgtccagtgcctgctcaagtttgt                                  >  2:248528‑M2/1‑34 (MQ=255)                                                                                                               aCCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTg                                  >  3:266125/1‑149 (MQ=255)                                                                                                               aCCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTg                                  <  1:241506/149‑1 (MQ=255)                                                                                                                ccGTCGGGCTGACGTTAAGAAAACGGAAGCTCAgacggtggagcggcaattacagcggattattttctctctcgagcgagaagcccgggaaaaagcggacaaagtgcgcgactgatttacatcgcgtccagtgcctgctcaagtttgta                                 <  1:15366‑M2/149‑117 (MQ=255)                                                                                                                ccGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGa                                 <  1:375558/149‑1 (MQ=255)                                                                                                                ccGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGa                                 <  1:295696/149‑1 (MQ=255)                                                                                                                  gTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGc                               >  4:418634/1‑149 (MQ=255)                                                                                                                     gggCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGaa                            <  2:41677/149‑1 (MQ=255)                                                                                                                       gCTGACGTTAAGAAAACGGAAGCTCAgacggtagagcggcaattacagcggattattttctctctcgagcgagaagcccgggaaaaagc                                                                                      >  3:325470‑M2/1‑26 (MQ=255)                                                                                                                       gCTGACGTTAAGAAAACGGAAGCTCAgacggtagagcagcaattacagcggattattttctctctcgagcgagaagcccgggaaaaagc                                                                                      <  4:325470‑M2/89‑64 (MQ=255)                                                                                                                             gTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGc                    >  2:259010/1‑149 (MQ=255)                                                                                                                             gTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGc                    >  2:148992/1‑149 (MQ=255)                                                                                                                              ttAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGcc                   <  4:530300/149‑1 (MQ=255)                                                                                                                               tAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCct                  <  4:415740/149‑1 (MQ=255)                                                                                                                                   aaaaCGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCcttctt              <  3:77670/149‑1 (MQ=255)                                                                                                                                   aaaaCGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCcttctt              <  1:516269/149‑1 (MQ=255)                                                                                                                                     aaCGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCCTTCTTGt            >  2:373921/1‑149 (MQ=255)                                                                                                                                       cGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCCTTCTTGTaa          <  2:218341/149‑1 (MQ=255)                                                                                                                                            gCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCCTTCTTGTAATTCgg     >  3:527341/1‑149 (MQ=255)                                                                                                                                            gCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCCTTCTTGTAATTCgg     >  3:523956/1‑149 (MQ=255)                                                                                                                                              tCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCCTTCTTGTAATTCGGCa   >  4:54632/1‑149 (MQ=255)                                                                                                                                               cAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCCTTCTTGTAATTCGGCAg  <  2:586513/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                    TACAAACTTGAGCAGGCACTGGACGCGATGTAAATCAGTCGCGCACTTTGTCCGCTTTTTCCCGGGCTTCTCGCTCGAGAGAGAAAATAATCCGCTGTAATTGCCGCTCCACCGTCGGGCTGACGTTAAGAAAACGGAAGCTCAGACGGGGAGTGGTGATGGTTTCATTCTTGCCATCAATCACTTTGCGCTCGCTGATGGAGATTAACTGGGCGTCAAAGTGAAAAACACCCCATTGCCCCATGTTGACTTCAATCTGAGCGAAGCGCATGCCTTCTTGTAATTCGGCAG  >  NC_000913/1243759‑1244049

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.