New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 321987439 (0.600)3 (0.050) 3/248 NT 6.7% coding (381/1380 nt) patA putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent
?NC_000913 = 3219902 47 (0.760)coding (409/1380 nt) patA putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent

CTGGGAGGTTTTGGAATTTTCAACGTGGGGCACCGTAATCCAGTTGTGGTTTCCGCCGTACAGAATCAACTTGCGAAACAACCGCTGCACAGCCAGGAGCTGCTCGATCCGTTACGGGC‑‑‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3219755‑3219874
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggc‑‑‑gTTAGCGCAGCAAGGGTTTTCGCCAACATCGCCCGTAACGGATCGAGCAGCTCCTGGCTGTGCAGCGGTTGTTTCGCAAGTTGATTCTGTACGGCGGAAACCACAACTGGATTACGGTGCCCCACGTTGAAAATTCCAAAACCTCCC  <  NC_000913/3219902‑3219757
                                                                                                                                                                                                                                                                             
CTGGGAGGTTTTGGAATTTTCAACGTGGGGCACCGTAATCCAGTTGTGGTTTCCGCCGTACAGAATCAACTTGCGAAACAACCGCTGCACAGCCAGGAGCTGCTCGATCCGTTACGGGCGATGTTAGCGCAGCAAGGGTTTTCGCCAAC                                                                                                                          <  3:469229/149‑1
  GGGAGGTTTTGGAATTTTCAACGTGGGGCACCGTAATCCAGTTGTGGTTTCCGCCGTACAGAATCAACTTGCGAAACAACCGCTGCACAGCCAGGAGCTGCTCGATCCGTTACGGGC‑‑‑GTTAGCGCAGCAAGGGTTTTCGCCAACATCGC                                                                                                                     >  2:349397/1‑149
         TTTGGAATTTTCAACGTGGGGCACCGTAATCCAGTTGTGGTTTCCGCCGTACAGAATCAACTTGCGAAACAACCGCTGCACAGCCAGGAGCTGCTCGATCCGTTACGGGC‑‑‑GTTAGCGCAGCAAGGGTTTTCGCCAACATCGCCCGTAAC                                                                                                              <  1:349397/149‑1
                                                                                                                    GGC‑‑‑GTTAGCGCAGCAAGGGTTTTCGCCAACATCGCCCGTAACGGATCGAGCAGCACCTGGCTGTGCAGCGGTTGTTTCGCAAGTTGATACTGTACGGCGGAAACCACAACTGGATTACGGTGCCCCACGTTGAAAATTCCAAAACCTCC   <  1:573245/149‑1
                                                                                                                     GC‑‑‑GTTAGCGCAGCAAGGGTTTTCGCCAACATCGCCCGTAACGGATCGAGCAGCTCCTGGCTGTGCAGCGGTTGTTTCGCAAGATGATTCTGTACGGCGGAAACCACAACTGGATTACGGTGCCCCACGTTGAAAATCCCAAAACCTCCC  >  1:243514/1‑149
                                                                                                                                                                                                                                                                             
CTGGGAGGTTTTGGAATTTTCAACGTGGGGCACCGTAATCCAGTTGTGGTTTCCGCCGTACAGAATCAACTTGCGAAACAACCGCTGCACAGCCAGGAGCTGCTCGATCCGTTACGGGC‑‑‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3219755‑3219874
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggc‑‑‑gTTAGCGCAGCAAGGGTTTTCGCCAACATCGCCCGTAACGGATCGAGCAGCTCCTGGCTGTGCAGCGGTTGTTTCGCAAGTTGATTCTGTACGGCGGAAACCACAACTGGATTACGGTGCCCCACGTTGAAAATTCCAAAACCTCCC  <  NC_000913/3219902‑3219757

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.