New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1754899 =	31 (0.480)	4 (0.070)	4/242	NT	13.4%	intergenic (‑422/+33)	ydhY/ydhZ	putative 4Fe‑4S ferridoxin‑type protein; FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex/uncharacterized protein
	?	NC_000913	1754928 =	23 (0.380)					intergenic (‑451/+4)	ydhY/ydhZ	putative 4Fe‑4S ferridoxin‑type protein; FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex/uncharacterized protein

TTTAACTTAAGCGACAATTATTTGTGACTTTCATTGCAGAAAATAAAAATAACATTATCGCTATAAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCGTTTATTGGCTAATGCTGTACGTAATACGCCTGCGATAACAATAT  >  NC_000913/1754751‑1755041                                                                                                                                                     |                                                                                                                                               tttAACTTAAGCGACAATTATTTGTGACTTTCATTGCAGAAAATAAAAATAACATTATCGCTATAAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAatat                                                                                                                                                >  4:26575/1‑149 (MQ=255)  tggaaatgcgcgatctggggcaggaaccaaagcatattgttatcgcaggcgtattacgtacagcattagccaataaacgcattcagcgcagtgagctggaaaagcaggcgatggaaaccgtcattaacgcactggtaaaatgaccatTc                                                                                                                                               <  4:194626‑M1/2‑1 (MQ=255)   tAACTTAAGCGACAATTATTTGTGACTTTCATTGCAGAAAATAAAAATAACATTATCGCTATAAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGTAAGAATATCa                                                                                                                                              <  1:212309/149‑1 (MQ=255)   tAACTTAAGCGACAATTATTTGTGACTTTCATTGCAGAAAATAAAAATAACATTATCGCTATAAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCa                                                                                                                                              <  1:249771/149‑1 (MQ=255)   ggaaatgcgcgatctggggcaggaaccaaagcatattgttatcgcaggcgtattacgtacagcattagccaataaacgcattcagcgcagtgagctggaaaagcaggcgatggaaaccgtcattaacgcactggtaaaatgaccatTCa                                                                                                                                              >  4:376880‑M1/147‑149 (MQ=255)    aaCTTAAGCGACAATTATTTGTGACTTTCATTGCAGAAAATAAAAATAACATTATCGCTATAAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAg                                                                                                                                             <  2:437341/149‑1 (MQ=255)    aaCTTAAGCGACAATTATTTGTGACTTTCATTGCAGAAAATAAAAATAACATTATCGCTATAAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAg                                                                                                                                             <  4:225913/149‑1 (MQ=255)       ttAAGCGACAATTATTTGTGACTTTCATTGCAGAAAATAAAAATAACATTATCGCTATAAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGAt                                                                                                                                          >  1:528871/1‑149 (MQ=255)       atgcgcgatctggggcaggaaccaaagcatattgttatcgcaggcgtattacgtacagcattagccaataaacgcattcagcgcagtgagctggaaaagcaggcgatggaaaccgtcattaacgcactggtaaaatgaccatTCAGGAt                                                                                                                                          >  1:468544‑M1/143‑149 (MQ=255)          aGCGACAATTATTTGTGACTTTCATTGCAGAAAATAAAAATAACATTATCGCTATAAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGaa                                                                                                                                       <  2:190920/149‑1 (MQ=255)                             tttCATTGCAGAAAATAAAAATAACATTATCGCTATAAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGa                                                                                                                    >  3:194626/1‑149 (MQ=255)                             caaagcatattgttatcgcaggcgtattacgtacagcattagccaataaacgcattcagcgcagtgagctggaaaagcaggcgatggaaaccgtcattaacgcactggtaaaatgaccatTCAGGATGAAGCTTACCGCCTCATCCTGa                                                                                                                    <  3:26670‑M1/29‑1 (MQ=255)                              ttCATTGCAGAAAATAAAAATAACATTATCGCTATAAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGaa                                                                                                                   <  3:397313/149‑1 (MQ=255)                                            tcgcaggcgtattacgtacagcattagccaataaacgcattcagcgcagtgagctggaaaagcaggcgatggaaaccgtcattaacgcactggtaaaatgaccatTCAg                                                                                                                                             >  2:403643‑M1/106‑109 (MQ=255)                                            tcgcaggcgtattacgtacagcattagccaataaacgcattcagcgcagtgagctggaaaagcaggcgatggaaaccgtcattaacgcactggtaaaatgaccatTCAg                                                                                                                                             <  1:403643‑M1/4‑1 (MQ=255)                                               aaataaCATTATCGCTATAAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTg                                                                                                  >  3:27453/1‑149 (MQ=255)                                                aataaCATTATCGCTATAAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGc                                                                                                 >  2:57828/1‑149 (MQ=255)                                                aataaCATTATCGCTATAAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGc                                                                                                 <  3:435748/149‑1 (MQ=255)                                                 ataaCATTATCGCTATAAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCg                                                                                                <  1:147347/149‑1 (MQ=255)                                                     cATTATCGCTATAAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTaa                                                                                            <  2:528871/149‑1 (MQ=255)                                                     cATTATCGCTATAAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTaa                                                                                            >  2:534967/1‑149 (MQ=255)                                                         aTCGCTATAAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGAc                                                                                        >  2:32872/1‑149 (MQ=255)                                                              tataAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATc                                                                                                                        >  4:222710/1‑112 (MQ=255)                                                              tataAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATc                                                                                                                        <  3:222710/112‑1 (MQ=255)                                                                   aTTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATc                                                                              >  3:318437/1‑149 (MQ=255)                                                                              tacCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTc                                                                   <  3:23897/149‑1 (MQ=255)                                                                               acCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTGATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTcc                                                                  >  4:512551/1‑149 (MQ=255)                                                                                 cGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAg                                                                <  1:32872/149‑1 (MQ=255)                                                                                         gTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATcc                                                                                                                       >  2:539516/1‑86 (MQ=255)                                                                                         gTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATcc                                                                                                                       <  1:539516/86‑1 (MQ=255)                                                                                          tataATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTgcg                                                       >  2:178697/1‑149 (MQ=255)                                                                                             aaTTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTg                                                    >  3:112937/1‑149 (MQ=255)                                                                                              aTTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTc                                                                                  <  1:594033/118‑1 (MQ=255)                                                                                              aTTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTc                                                                                  >  2:594033/1‑118 (MQ=255)                                                                                               tttCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGaa                                                  <  4:318437/149‑1 (MQ=255)                                                                                                gctggaaaagcaggcgatggaaaccgtcattaacgcactggtaaaatgaccatTCAGGATGAAGCTTACCGCCTCATCCt                                                                                                                      <  2:285684‑M1/27‑1 (MQ=255)                                                                                                gctggaaaagcaggcgatggaaaccgtcattaacgcactggtaaaatgaccatTCAGGATGAAGCTTACCGCCTCATCCt                                                                                                                      >  1:285684‑M1/54‑80 (MQ=255)                                                                                                         tgttATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCGTTTAtt                                        <  1:178697/149‑1 (MQ=255)                                                                                                                   aaTGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCGTTTATTGGCTAATGCt                              <  1:534967/149‑1 (MQ=255)                                                                                                                                  cGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCGTTTATTGGCTAATGCTGTACGTAATACGCCt               >  2:596260/1‑149 (MQ=255)                                                                                                                                            gCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCGTTTATTGGCTAATGCTGTACGTAATACGCCTGCGATAACaa     <  3:26575/149‑1 (MQ=255)                                                                                                                                             cAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCGTTTATTGGCTAATGCTGTACGGAATACGCCTGCGATAACAat    <  4:112937/149‑1 (MQ=255)                                                                                                                                             atgaccatTCAGGATGAGGCGGTAAGCTTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCGTTTATTGGCTAATGCTGTACGTAATACGCCTGCGATAACAat    <  4:26670‑M1/141‑1 (MQ=255)                                                                                                                                              aaGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCGTTTATTGGCTAATGCTGTACGTAATACGCCTGCGATAACAata   >  4:75607/1‑149 (MQ=255)                                                                                                                                               aGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCATTTATTGGCTAATGCTGTACGTAATACGCCTGCGATAACAatat  >  1:452596/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                               TTTAACTTAAGCGACAATTATTTGTGACTTTCATTGCAGAAAATAAAAATAACATTATCGCTATAAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCGTTTATTGGCTAATGCTGTACGTAATACGCCTGCGATAACAATAT  >  NC_000913/1754751‑1755041

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.