New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1754899 =	31 (0.480)	4 (0.070)	4/242	NT	13.4%	intergenic (‑422/+33)	ydhY/ydhZ	putative 4Fe‑4S ferridoxin‑type protein; FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex/uncharacterized protein
	?	NC_000913	1754928 =	23 (0.380)					intergenic (‑451/+4)	ydhY/ydhZ	putative 4Fe‑4S ferridoxin‑type protein; FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex/uncharacterized protein

TTCATTGCAGAAAATAAAAATAACATTATCGCTATAAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCGTTTATTGGCTAATGCTGTACGTAATACGCCTGCGATAACAATATGCTTTGGTTCCTGCCCCAGATCGCGCATTTCCA  >  NC_000913/1754780‑1755074                                                                                                                                                     |                                                                                                                                                   ttCATTGCAGAAAATAAAAATAACATTATCGCTATAAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGaa                                                                                                                                                    <  3:397313/149‑1 (MQ=255)        attgttatcgcaggcgtattacgtacagcattagccaataaacgcattcagcgcagtgagctggaaaagcaggcgatggaaaccgtcattaacgcactggtaaaatgaccattcaggatgaagcttaccgcctcatcctgaATGGTCAt                                                                                                                                             <  4:26670‑M2/8‑1 (MQ=255)                  aaataaCATTATCGCTATAAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTg                                                                                                                                   >  3:27453/1‑149 (MQ=255)                   aataaCATTATCGCTATAAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGc                                                                                                                                  >  2:57828/1‑149 (MQ=255)                   aataaCATTATCGCTATAAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGc                                                                                                                                  <  3:435748/149‑1 (MQ=255)                    ataaCATTATCGCTATAAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCg                                                                                                                                 <  1:147347/149‑1 (MQ=255)                        cATTATCGCTATAAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTaa                                                                                                                             >  2:534967/1‑149 (MQ=255)                        cATTATCGCTATAAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTaa                                                                                                                             <  2:528871/149‑1 (MQ=255)                            aTCGCTATAAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGAc                                                                                                                         >  2:32872/1‑149 (MQ=255)                                      aTTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATc                                                                                                               >  3:318437/1‑149 (MQ=255)                                                 tacCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTc                                                                                                    <  3:23897/149‑1 (MQ=255)                                                  acCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTGATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTcc                                                                                                   >  4:512551/1‑149 (MQ=255)                                                    cGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAg                                                                                                 <  1:32872/149‑1 (MQ=255)                                                             tataATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTgcg                                                                                        >  2:178697/1‑149 (MQ=255)                                                                aaTTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTg                                                                                     >  3:112937/1‑149 (MQ=255)                                                                 aTTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTc                                                                                                                   <  1:594033/118‑1 (MQ=255)                                                                 aTTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTc                                                                                                                   >  2:594033/1‑118 (MQ=255)                                                                  tttCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGaa                                                                                   <  4:318437/149‑1 (MQ=255)                                                                            tgttATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCGTTTAtt                                                                         <  1:178697/149‑1 (MQ=255)                                                                                      aaTGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCGTTTATTGGCTAATGCt                                                               <  1:534967/149‑1 (MQ=255)                                                                                                     cGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCGTTTATTGGCTAATGCTGTACGTAATACGCCt                                                >  2:596260/1‑149 (MQ=255)                                                                                                               gCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCGTTTATTGGCTAATGCTGTACGTAATACGCCTGCGATAACaa                                      <  3:26575/149‑1 (MQ=255)                                                                                                                cAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCGTTTATTGGCTAATGCTGTACGGAATACGCCTGCGATAACAat                                     <  4:112937/149‑1 (MQ=255)                                                                                                                atgaccatTCAGGATGAGGCGGTAAGCTTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCGTTTATTGGCTAATGCTGTACGTAATACGCCTGCGATAACAat                                     <  4:26670‑M1/141‑1 (MQ=255)                                                                                                                 aaGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCGTTTATTGGCTAATGCTGTACGTAATACGCCTGCGATAACAata                                    >  4:75607/1‑149 (MQ=255)                                                                                                                  aGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCATTTATTGGCTAATGCTGTACGTAATACGCCTGCGATAACAatat                                   >  1:452596/1‑149 (MQ=255)                                                                                                                        tcaggatgaggcggtaagcttcatcctgaATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCGTTTATTGGCTAATGCTGTACGTAATACGCCTGCGATAACAATATGCTTTg                             <  3:26670‑M2/120‑1 (MQ=255)                                                                                                                          aggatgaggcggtaagcttcatcctgaATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGc                                                                                                <  2:285684‑M2/53‑1 (MQ=255)                                                                                                                          aggatgaggcggtaagcttcatcctgaATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGc                                                                                                >  1:285684‑M2/28‑80 (MQ=255)                                                                                                                           GGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCGTTTATTGGCTAATGCTGTACGTAATACGCCTGCGATAACAATATGCTTTGGtt                          <  3:446963‑M1/149‑1 (MQ=255)                                                                                                                             ATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCGTTTATTGGCTAATGCTGTACGTAATACGCCTGCGATAACAATATGCTTTGGTTcc                        >  4:150099‑M1/1‑149 (MQ=255)                                                                                                                                AAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCGTTTATTGGCTAATGCTGTACGTAATACGCCTGCGATAACAATATGCTTTGGTTCCTGc                     <  1:545291‑M1/149‑1 (MQ=255)                                                                                                                                        cGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCGTTTATTGGCTAATGCTGTACGTAATACGCCTGCGATAACAATATGCTTTGGTTCCTGCCCCAGATc             <  3:512551/149‑1 (MQ=255)                                                                                                                                              atcctgaATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCGTTTATTGGCTAATGCTGTACGTAATACGCCTGCGATAACAATATGCTTTGGTTCCTGCCCCAGATCGCGCAt       >  1:468544‑M2/8‑149 (MQ=255)                                                                                                                                                 ctgaATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCGTTTATTGGCTAATGCTGTACGTAATACGCCTGCGa                                            <  1:403643‑M2/105‑1 (MQ=255)                                                                                                                                                 ctgaATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCGTTTATTGGCTAATGCTGTACGTAATACGCCTGCGa                                            >  2:403643‑M2/5‑109 (MQ=255)                                                                                                                                                  tgaATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCGTTTATTGGCTAATGCTGTACGTAATACGCCTGCGATAACAATATGCTTTGGTTCCTGCCCCAGATCGCGCATTTcc   >  4:376880‑M2/4‑149 (MQ=255)                                                                                                                                                   gaATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCGTTTATTGGCTAATGCTGTACGTAATACGCCTGCGATAACAATATGCTTTGGTTCCTGCCCCAGATCGCGCATTTCCa  <  4:194626‑M2/147‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   TTCATTGCAGAAAATAAAAATAACATTATCGCTATAAATTAAAATACATACCGAAATTCGTATAATTTCAGCAGTTGTTATTTAGAATGATTAACTGGACCGCAACTGAAGCAAGAATATCAGGATGAAGCTTACCGCCTCATCCTGAATGGTCATTTTACCAGTGCGTTAATGACGGTTTCCATCGCCTGCTTTTCCAGCTCACTGCGCTGAATGCGTTTATTGGCTAATGCTGTACGTAATACGCCTGCGATAACAATATGCTTTGGTTCCTGCCCCAGATCGCGCATTTCCA  >  NC_000913/1754780‑1755074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.