New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4534380 =	95 (1.230)	2 (0.030)	3/256	NT	2.2%	intergenic (‑327/+50)	yjhX/yjhZ	UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment
	?	NC_000913	4534391 =	88 (1.170)					intergenic (‑338/+39)	yjhX/yjhZ	UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment
Rejected: Frequency below/above cutoff threshold.

GGTTTTTCACTCATCAAAGCCGGTGTGAATCCGGAAAATACCCTTTCAAAAAAATTACTTATCAGGATTGGCTTCAATTTTTCAAGCATCGAAGATGGGTGAGCATATTTATGTTCTGGATTTAACAAAAGGAGAATAATCTCCCGAAGGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4534531‑4534380 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggaGATTATTCTCCTTTTGTTAAATCCAGAACATAAATATGCTCACCCATCTTCGATGCTTGAAAAATTGAAGCCAATCCTGATAAGTAATTTTTTTGAAAGGGTATTTTCCGGATTCACACCGGCTTTGATGAGTGAAAAACCGTTCTC  >  NC_000913/4534391‑4534537                                                                                                                                                                                                                                                                                                             GGTTTTTCACTCATCAAAGCCGGTGTGAATCCGGAAAATACCCTTTCAAAAAAATTACTTATCAGGATTGGCTTCAATTTTTCAAGCATCGAAGATGGGTGAGCATATTTATGTTCTGGATTTAACAAAAGGAGAATAATCTCCCGAAG                                                                                                                                                        <  3:285594/149‑1  GTTTTTCACTCATCAAAGCCGGTGTGAATCCGTAAAATACCCTTTCAAAAAAATTACTTATCAGGATTGGCTTCAATTTTTCAAGCATCGAAGATGGGTGAGCATATTTATGTTCTGGATTTAACAAAAGGAGAATAATCTCCCGAAGG                                                                                                                                                       <  4:103321/149‑1  GTTTTTCACTCATCAAAGCCGGTGTGAATCCGGAAAATACCCTTTCAAAAAAATTACTTATCAGGATTGGCTTCAATTTTTCAAGCATCGAAGATGGGTGAGCATATTTATGTTCTGGATTTAACAAAAGGAGAATAATCTCCCGAAGG                                                                                                                                                       <  2:359203/149‑1  GTTTTTCACTCATCAAAGCCGGTGTGAATCCGGAAAATACCCTTTCAAAAAAATTACTTATCAGGATTGGCTTCAATTTTTCAAGCATCGAAGATGGGTGAGCATATTTATGTTCTGGATTTAACAAAAGGAGAATAATCTCCCGAAGG                                                                                                                                                       <  4:358410/149‑1   TTTTTCACTCATCAAAGCCGGTGTGAATCCGGAAAATACCCTTTCAAAAAAATTACTTATCAGGATTGGCTTCAATTTTTCAAGCATCGAAGATGGGTGAGCATATTTATGTTCTGGATTTAACAAAAGGAGAATAATCTCCCGAAGGG                                                                                                                                                      >  4:212484/1‑149         ACTCATCAAAGCCGGTGTGAATCCGGAAAATACCCTTTCAAAAAAATTACTTATCAGGATTGGCTTCAATTTTTCAAGCATCGAAGATGGGTGAGCATATTTATGTTCTGGATTTAACAAAAGGAGAATAATCTCCCTTCGGGAGATTA                                                                                                                                                <  1:547440/149‑1                                                                    TTGGCTTCAATTTTTCAAGCATCGAAGATGGGTGAGCATATTTATGTTCTGGATTTAACAAAAGGAGAATAATCTCCCTTCGGGAGATTATTCTCCTTTT                                                                                                                                      >  3:255905/1‑100                                                                    TTGGCTTCAATTTTTCAAGCATCGAAGATGGGTGAGCATATTTATGTTCTGGATTTAACAAAAGGAGAATAATCTCCCTTCGGGAGATTATTCTCCTTTT                                                                                                                                      <  4:255905/100‑1                                                                                                                                                      GGAGATTATTCTCCTTTTGTTAAATCCAGAACATAAATATGCTCACCCATCTTCGATGCTTGAAAAATTGAAGCCAATCCTGATAAGTAATTTTTTTGAAAGGGTATTTTCCGGATTCACACCGGCTTTGATGAGTGAAAAACCGTTCT   >  3:40641/1‑149                                                                                                                                                       GAGATTATTCTCCTTTTGTTAAATCCAGAACATAAATATGCTCACCCATCTTCGATGCTTGAAAAATTGAAGCCAATCCTGATAAGTAATTTTTTTGAAAGGGTATTTTCCGGATTCACACCGGCTTTGATGAGTGAAAAACCGTTCTC  <  3:382733/149‑1                                                                                                                                                                                                                                                                                                             GGTTTTTCACTCATCAAAGCCGGTGTGAATCCGGAAAATACCCTTTCAAAAAAATTACTTATCAGGATTGGCTTCAATTTTTCAAGCATCGAAGATGGGTGAGCATATTTATGTTCTGGATTTAACAAAAGGAGAATAATCTCCCGAAGGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4534531‑4534380 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggaGATTATTCTCCTTTTGTTAAATCCAGAACATAAATATGCTCACCCATCTTCGATGCTTGAAAAATTGAAGCCAATCCTGATAAGTAATTTTTTTGAAAGGGTATTTTCCGGATTCACACCGGCTTTGATGAGTGAAAAACCGTTCTC  >  NC_000913/4534391‑4534537

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.