New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2304722 =	23 (0.150)	12 (0.080)	7/252	NT	18.5%	noncoding (306/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	NC_000913	3042447 =	84 (0.560)					noncoding (127/155 nt)	REP210 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP210 (repetitive extragenic palindromic) element; contains 3 REP sequences

CATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAAC  >  NC_000913/2304450‑2304909                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                            cATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTAt                                                                                                                                                                                            <  2:404055/274‑1 (MQ=40)                       ccTGATGCGACGCTGGCGCTTCTTAGCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTg                                                                                                                                                                     <  2:518622/275‑1 (MQ=38)                                              tatgcggCATACACCGCTGTGAAGGGCGGAACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATaa                                                                                                                                               <  2:280963/269‑1 (MQ=255)                                                              cTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCTGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGCTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCAGGAGGTTGGATCAGGCGGTTACGCCGCAt                                                                                                                               >  2:370295/1‑274 (MQ=255)                                                              cTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTCGGTTGGATAAGGCGGTTACGCCGCAt                                                                                                                               >  2:262957/1‑274 (MQ=38)                                                              cTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCAt                                                                                                                               >  2:345656/1‑274 (MQ=38)                                                              cTGTGAAGTGCGGCACCCCGTAGGACAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCCTGCGCGTCTTATCAGGCCTACCCCGCTGTTAAGTGCTCCCCCCCGTAGGTTGGATAAGGCGGTTACGCCGCaa                                                                                                                               >  2:445700/1‑273 (MQ=255)                                                                                              ggCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATg                                                                                              <  1:102602/275‑1 (MQ=35)                                                                                                                           cccGAGCGGGTTGCCTGATGCGACGCTGGCGCTTCTTATAAGGCCTACACCGCTTGGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTaca                                                                 <  2:350378/275‑1 (MQ=255)                                                                                                                                   caaacgcattccatacaaccatgccatctggcacggcttcgtgctcggcggtagtgtgtgccactttctggcgatctatttgtatattgggcaggcgtaatgggtatgcctttgtaggcctgataagacgcgccagcgtcgca                                                                                                                                                                                             >  2:66675‑M1/143‑143 (MQ=255)                                                                                                                                     ttGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGa                                                        >  2:490768/1‑274 (MQ=39)                                                                                                                                          cgATGCGCCGGTGGCCGGTCTGACCCGGCCTAACCCGCTGGGAAGTGCGCCACCCCGTAGGTCGGATAAGGCGGTTCGGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCt                                                  <  4:345655/274‑1 (MQ=14)                                                                                                                                                       atgccatctggcacggcttcgtgctcggcggtagtgtgtgccactttctggcgatctatttgtatattgggcaggcgtaatgggtatgcctttgtaggcctgataagacgcgccagcgtcgcATCAg                                                                                                                                                                                         <  5:309040‑M1/5‑1 (MQ=255)                                                                                                                                                       atgccatctggcacggcttcgtgctcggcggtagtgtgtgccactttctggcgatctatttgtatattgggcaggcgtaatgggtatgcctttgtaggcctgataagacgcgccagcgtcgcATCAg                                                                                                                                                                                         >  6:309040‑M1/123‑127 (MQ=255)                                                                                                                                                                               cTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGCTGAGGCGGTTACGCCGCAt              >  2:474609/1‑274 (MQ=255)                                                                                                                                                                                         agccACCCCGTGTAGCGGATAAGGCGGTTACGCTGCAGCCGAAATCAAACGCCCAAGGCGGTTGCCTGATGCGAGGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTACACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGGCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTa    <  2:409822/272‑1 (MQ=14)                                                                                                                                                                                            cACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACAGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCTCATCCCACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGACGTGCTCCACCCCGTCGGTCGGCTAAGGCGGTTGCGCCGCATCCGACCTCTAAc  >  1:108045/1‑273 (MQ=255)                                                                                                                                                                                              ccccGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTc                                                                               >  2:240520/1‑194 (MQ=34)                                                                                                                                                                                                                    ttACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCg                                                                                                              >  2:42621/1‑141 (MQ=37)                                                                                                                                                                                                                        attgggcaggcgtaatgggtatgcctttgtaggcctgataagacgcgccagcgtcgcATCa                                                                                                                                                                                          <  7:684900‑M1/4‑1 (MQ=255)                                                                                                                                                                                                                        attgggcaggcgtaatgggtatgcctttgtaggcctgataagacgcgccagcgtcgcATCa                                                                                                                                                                                          >  8:684900‑M1/58‑61 (MQ=255)                                                                                                                                                                                                                         ttgggcaggcgtaatgggtatgcctttgtaggcctgataagacgcgccagcgtcgcATCAg                                                                                                                                                                                         <  2:163072‑M1/5‑1 (MQ=255)                                                                                                                                                                                                                             gcaggcgtaatgggtatgcctttgtaggcctgataagacgcgccagcgtcgca                                                                                                                                                                                             >  4:158438‑M1/53‑53 (MQ=255)                                                                                                                                                                                                                                  aCATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACg                                                                                         <  7:1048139/148‑1 (MQ=39)                                                                                                                                                                                                                                               aaGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACa                                                                                                                         >  4:490342/1‑103 (MQ=32)                                                                                                                                                                                                                                                     gTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGgc                                                                                    >  2:198778/1‑134 (MQ=37)                                                                                                                                                                                                                                                         ccTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGt                                                                                <  4:198777/134‑1 (MQ=37)                                                                                                                                                                                                                                                          ctgataagacgcgccagcgtcgcATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATa                                                                                                                                                >  5:322631‑M1/24‑69 (MQ=255)                                                                                                                                                                                                                                                          ctgataagacgcgccagcgtcgcATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATa                                                                                                                                                <  6:322631‑M1/46‑1 (MQ=255)                                                                                                                                                                                                                                                          ctgataagacgcgccagcgtcgcATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAgg                                                                                                                                             >  5:1111835‑M1/24‑72 (MQ=255)                                                                                                                                                                                                                                                          ctgataagacgcgccagcgtcgcATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAgg                                                                                                                                             <  6:1111835‑M1/49‑1 (MQ=255)                                                                                                                                                                                                                                                             ataagacgcgccagcgtcgcATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGt                                                                                                       >  8:359513‑M1/21‑107 (MQ=255)                                                                                                                                                                                                                                                             ataagacgcgccagcgtcgcATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGt                                                                                                       <  7:359513‑M1/87‑1 (MQ=255)                                                                                                                                                                                                                                                              taagacgcgccagcgtcgcATCAGGCCTACACCGCTGTGAAGTGCTCCAcccc                                                                                                                                                            >  5:182357‑M1/20‑53 (MQ=255)                                                                                                                                                                                                                                                              taagacgcgccagcgtcgcATCAGGCCTACACCGCTGTGAAGTGCTCCAcccc                                                                                                                                                            <  6:182357‑M1/34‑1 (MQ=255)                                                                                                                                                                                                                                                              taagacgcgccagcgtcgcATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCaa                                                                                                                    <  7:587065‑M1/74‑1 (MQ=255)                                                                                                                                                                                                                                                              taagacgcgccagcgtcgcATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCaa                                                                                                                    >  8:587065‑M1/20‑93 (MQ=255)                                                                                                                                                                                                                                                                 gacgcgccagcgtcgcATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTgg                                                                                                                                                   >  7:804039‑M1/17‑59 (MQ=255)                                                                                                                                                                                                                                                                 gacgcgccagcgtcgcATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTgg                                                                                                                                                   <  8:804039‑M1/43‑1 (MQ=255)                                                                                                                                                                                                                                                                           cgTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTg                                                                                                 >  6:27506/1‑99 (MQ=255)                                                                                                                                                                                                                                                                           cgTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTg                                                                                                 <  5:27506/99‑1 (MQ=255)                                                                                                                                                                                                                                                                           cgTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGt                                                                                <  7:144013/116‑1 (MQ=39)                                                                                                                                                                                                                                                                           cgTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGt                                                                                >  8:144013/1‑116 (MQ=255)                                                                                                                                                                                                                                                                             tCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGt                                                                                >  6:83122/1‑114 (MQ=40)                                                                                                                                                                                                                                                                             tCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGt                                                                                <  5:83122/114‑1 (MQ=40)                                                                                                                                                                                                                                                                              cTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGcc                                                                                                          <  7:1028536/87‑1 (MQ=255)                                                                                                                                                                                                                                                                              cTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGcc                                                                                                          >  8:1028536/1‑87 (MQ=255)                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                            CATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAAC  >  NC_000913/2304450‑2304909

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.