BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4534139	134 (0.850)	4 (0.030)	4/246	NT	2.9%	intergenic (‑86/+291)	yjhX/yjhZ	UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment
*	?	NC_000913	= 4534160	142 (0.970)	4 (0.030)	4/246	NT	2.9%	intergenic (‑107/+270)	yjhX/yjhZ	UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment
Rejected: Frequency below/above cutoff threshold.

Only 100 of 178 total aligned reads displayed.

GGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCAACGGAAGTGACGCGGCCTGAAGAATCGCGGACGTGCGCAATACGTCTACCTTTAGCGAGAACGTGTAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGAATGCATGTTGAAGTACGCCTGAAATGGCCTCATCGGCTTTTCCCTTCGGGAGATTATTCTCCTTTTGTTAAATCCA  >  NC_000913/4533907‑4534415

                           cccTTCGCGGCTGTAGCATTCAACGGAAGTGACGCGGCCTGAAGAATCGCGGACGTGCGCAATACGTCTACCTTTAGCGAGAACGTGTAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACCCACCGCGGTGTCCGCATTCGCTTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGCACTGATTATCGGATGGTTACATTCTCCAGCATCCAAGCCTCCGgttg                                                                                                                                                                                                                  >  2:534247/1‑274 (MQ=255)

                                  cgGCTGTAGCAATAAACGGAAGGGACGCGNNNTGAAGAATCGCGGACGTGCGCAATACGTCTAACTTTAGCGAGAACGTGTAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGaaa                                                                                                                                                                                                          <  3:156569/275‑1 (MQ=255)

                                            aTTCAACGGAAGTGACGCGGCCTGAAGAATCGCGGACTGGCGCAATACGTCTACCTTTAGAGAGAACGTGTAAGGTATGTTGTTCCTGACTGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGTGGTGTCCGCATTCGATTTCGGCGCATTGATAATCATTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGTTTATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACg                                                                                                                                                                                                <  1:119537/275‑1 (MQ=255)

                                                           ctctgCCTGAAGAAGCTCGGACGTGCGCAATACGTCTACATTGAGCGAGAACGTGTAATGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACAACGCGGTGTCCGCAGTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTAGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAaca                                                                                                                                                                                 <  1:47313/271‑1 (MQ=255)

                                                           cgcgGCCTGAAGAATCGCGGACGTGCGCAATACGTCTACCTTTAGCGAGAACGTGTAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAaca                                                                                                                                                                                 <  2:532508/275‑1 (MQ=255)

                                                                                               tACCTTTAGCGAGAACGTGTAAGGTATGTTGTTCCTGACGGGATAAATCCATACTGAAGAACCTATTTACTCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATCGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGTGAATATTAACACGTAGTTCTAGGAGGGTTATGTTTCAGTAGAAAAAg                                                                                                                                             >  2:102430/1‑275 (MQ=255)

                                                                                                      aGCGAGAACGTGTAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGCTGATTACATTCTCCAGCATCAAAGCCTCGGGTTGGGTTGAAAGGTATTTCCGGAGCGAATATTAACACGTAGTTATAGGAGGGCTTTGTTTCCGTAGAAAAAGGGTGaat                                                                                                                                      >  4:333611/1‑273 (MQ=255)

                                                                                                      aGCGAGAACGTGTAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAACGTGTGATg                                                                                                                                      >  2:246956/1‑275 (MQ=255)

                                                                                                               gtgtAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATagg                                                                                                                                                                     <  2:130412/235‑1 (MQ=255)

                                                                                                                 gtAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAactgatt                                                                                                                                                                                                                                                          <  6:450939‑M2/148‑8 (MQ=255)

                                                                                                                    aGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAactgattatc                                                                                                                                                                                                                                                       >  5:450939‑M2/1‑138 (MQ=255)

                                                                                                                       tATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCgg                                                                                                                                                                                                                                                     >  7:743170/1‑147 (MQ=255)

                                                                                                                       tATGTTGTTACTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCgg                                                                                                                                                                                                                                                     <  8:743170/147‑1 (MQ=255)

                                                                                                                          gttgttCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATCTTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGcc                                                                                                                  >  4:502314/1‑275 (MQ=255)

                                                                                                                           ttgttCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGga                                                                                                                                                                                                                                                    <  6:857163/144‑1 (MQ=255)

                                                                                                                               tCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAactga                                                                                                                                                                                                                                                            <  7:1074612‑M2/132‑6 (MQ=255)

                                                                                                                                ccTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTta                                                                                                                                                                         >  3:104236/1‑214 (MQ=255)

                                                                                                                                 cTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAACGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCATCGGGTTTAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGATATAGGAGGGATATGTTTCAGTAGAAAAAGTGAGATGTAATTTGGAAAGTGAATGACAACCCAt                                                                                                           >  1:105713/1‑275 (MQ=255)

                                                                                                                                    aCGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATagg                                                                                                                                                                     <  1:104236/214‑1 (MQ=255)

                                                                                                                                         aTAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAa                                                                                                                                                                                                                                                                <  6:1100716‑M2/118‑2 (MQ=255)

                                                                                                                                         aTAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAa                                                                                                                                                                                                                                                                >  5:1100716‑M2/1‑117 (MQ=255)

                                                                                                                                               tCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAg                                                                                                                                                                                                                            >  8:660624/1‑148 (MQ=255)

                                                                                                                                                cATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGc                                                                                                                                                                                                                           >  5:562596/1‑148 (MQ=255)

                                                                                                                                                     tGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATATGAGGGATATGTTTCAGTAGAAAAAGTGTGATTTACTTTGGAAATTGAATGCAAACCCATTTACTGGAAAAGGAAGATGa                                                                                       >  4:309399/1‑275 (MQ=255)

                                                                                                                                                       aagaaCCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGgt                                                                                                                                                                                                                    <  6:562596/148‑1 (MQ=255)

                                                                                                                                                          aaCCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGgttga                                                                                                                                                                                                                 <  7:660624/148‑1 (MQ=255)

                                                                                                                                                            ccTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCCCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGGAGTTATAGGAGGGATGTGTTTCAGTAGAAAAAGTGGGATGTACTTTGGAAATTTATTGCCAACCCATTTCCTGGAAAAGGCAGAtataccagac                                                                                >  4:524807/1‑266 (MQ=255)

                                                                                                                                                              tATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAactgattatcag                                                                                                                                                                                                                                                     >  5:840217‑M2/1‑96 (MQ=255)

                                                                                                                                                              tATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCgg                                                                                                                                                                                                                                                     >  6:840217/1‑108 (MQ=255)

                                                                                                                                                              tATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGgttgagttg                                                                                                                                                                                                             >  8:647755/1‑148 (MQ=255)

                                                                                                                                                               aTTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGa                                                                              >  2:244680/1‑274 (MQ=255)

                                                                                                                                                                 ttAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCTGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCGCGGGTTGAGTTGAACGGTATTTACGGAGCGAATATTAACACGAAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACATTGACGAATg                                                                           >  1:55072/1‑275 (MQ=255)

                                                                                                                                                                 ttAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAactg                                                                                                                                                                                                                                                             >  7:172643‑M2/1‑93 (MQ=255)

                                                                                                                                                                     tcatccTGTGCAAAACGGGCAAACCAACCGCGGGGGCCGCATTCGATTTCGGCGCATTGATAATAAGGCCGGCCTGAAAAGGTCTGGGAAATGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGTGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGAATGCATg                                                                       <  4:246955/275‑1 (MQ=255)

                                                                                                                                                                      catcatGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAa                                                                                                                                                                                                                                                                >  6:705419‑M2/1‑88 (MQ=255)

                                                                                                                                                                      catcatGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAa                                                                                                                                                                                                                                                                <  5:705419‑M2/89‑2 (MQ=255)

                                                                                                                                                                      catcatGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGgatgat                                                                                                                                                                                                                                                >  5:946803/1‑105 (MQ=255)

                                                                                                                                                                      catcatGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGgatgat                                                                                                                                                                                                                                                <  6:946803/105‑1 (MQ=255)

                                                                                                                                                                        tcatGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGgatgat                                                                                                                                                                                                                                                >  8:366811/1‑103 (MQ=255)

                                                                                                                                                                        tcatGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAaca                                                                                                                                                                                 <  4:459168/166‑1 (MQ=255)

                                                                                                                                                                         catGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATtctc                                                                                                                                                                                                                                       <  7:290540/111‑1 (MQ=255)

                                                                                                                                                                          atGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTAc                                                                                                                                                                                                 <  8:1116108/148‑1 (MQ=255)

                                                                                                                                                                            gtgCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTAttt                                                                                                                                                                                                   <  7:959881/144‑1 (MQ=255)

                                                                                                                                                                              gCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAactgattatc                                                                                                                                                                                                                                                       <  5:487020‑M2/90‑11 (MQ=255)

                                                                                                                                                                              gCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAactgattatc                                                                                                                                                                                                                                                       >  6:487020‑M2/1‑80 (MQ=255)

                                                                                                                                                                              gCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATtct                                                                                                                                                                                                                                        >  7:633634/1‑105 (MQ=255)

                                                                                                                                                                              gCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGgttg                                                                                                                                                                                                                  >  7:359706/1‑127 (MQ=255)

                                                                                                                                                                              gCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGgttg                                                                                                                                                                                                                  <  8:359706/127‑1 (MQ=255)

                                                                                                                                                                                aaaaCGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACgg                                                                                                                                                                                               >  6:45861/1‑144 (MQ=255)

                                                                                                                                                                                 aaaCGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGga                                                                                                                                                                                                                                                    <  7:37459/90‑1 (MQ=255)

                                                                                                                                                                                          aaCACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTAc                                                                                                                                                                                                                                             >  6:291042/1‑88 (MQ=255)

                                                                                                                                                                                          aaCACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTAc                                                                                                                                                                                                                                             <  5:291042/88‑1 (MQ=255)

                                                                                                                                                                                          aaCACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCaa                                                                                                                                                                                                                              >  8:21290/1‑103 (MQ=255)

                                                                                                                                                                                          aaCACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCaa                                                                                                                                                                                                                              <  7:21290/103‑1 (MQ=255)

                                                                                                                                                                                           acacacCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCa                                                                                                                                                                                                                                     <  6:103582/95‑1 (MQ=255)

                                                                                                                                                                                           acacacCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCa                                                                                                                                                                                                                                     >  5:103582/1‑95 (MQ=255)

                                                                                                                                                                                            cacacCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGgatgat                                                                                                                                                                                                                                                >  7:893662/1‑83 (MQ=255)

                                                                                                                                                                                             acacCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGt                                                                                                                                                                              <  8:246843/148‑1 (MQ=255)

                                                                                                                                                                                              cacCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGAATGCATGTTGAAGTACGCCTGAAATGGCCTCa                                              >  2:404155/1‑275 (MQ=255)

                                                                                                                                                                                                ccGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGga                                                                                                                                                                                                                                                    >  8:591648/1‑75 (MQ=255)

                                                                                                                                                                                                ccGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGACTGCCAACCCATTTACTGGAAAAGGCAGTTGACACTGACGAATGCATGTTGAAGTACGCCTGAAATGGCCTAAta                                            >  4:357993/1‑274 (MQ=255)

                                                                                                                                                                                                 cgcgGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGAATGCATGTTGAAGTACGCCTGAAATGGCCTCATCg                                           >  4:176515/1‑275 (MQ=255)

                                                                                                                                                                                                            cATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGat                                                                                                                                                               >  5:1127033/1‑148 (MQ=255)

                                                                                                                                                                                                               tCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTaa                                                                                                                                                                                   >  5:467315/1‑125 (MQ=255)

                                                                                                                                                                                                                cGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTaa                                                                                                                                                                                   >  7:613806/1‑124 (MQ=255)

                                                                                                                                                                                                                cGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTaa                                                                                                                                                                                   <  8:613806/124‑1 (MQ=255)

                                                                                                                                                                                                                    ttCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGa                                                                                                                                                                                              <  6:802537/109‑1 (MQ=255)

                                                                                                                                                                                                                    ttCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGa                                                                                                                                                                                              >  5:802537/1‑109 (MQ=255)

                                                                                                                                                                                                                              tGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAaca                                                                                                                                                                                 <  8:316158/112‑1 (MQ=255)

                                                                                                                                                                                                                                aTAATCAGTCCGGCCTGAAAAGGTCGGGGAactgattatcaatgcgccgaaatcgaatgcggacaccgcggtgtgtttgcacgttttgcacatgatgattaaataggttcttcagtatgaatttatcccgtcaggaacaacatacctt                                                                                                                                           <  6:879708‑M2/148‑119 (MQ=255)

                                                                                                                                                                                                                                aTAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAgtg                                                                                                                                           <  8:382155/148‑1 (MQ=255)

                                                                                                                                                                                                                                   aTCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGaaaa                                                                                                                                               >  6:718548/1‑141 (MQ=255)

                                                                                                                                                                                                                                   aTCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGaaaa                                                                                                                                               >  6:662791/1‑141 (MQ=255)

                                                                                                                                                                                                                                   aTCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGaaaa                                                                                                                                               <  5:718548/141‑1 (MQ=255)

                                                                                                                                                                                                                                   aTCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGaaaa                                                                                                                                               <  5:662791/141‑1 (MQ=255)

                                                                                                                                                                                                                                     cAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGgttg                                                                                                                                                                                                                  >  6:59661/1‑72 (MQ=255)

                                                                                                                                                                                                                                     cAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGgttg                                                                                                                                                                                                                  <  5:59661/72‑1 (MQ=255)

                                                                                                                                                                                                                                      aGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGt                                                                                                                                     <  6:1127033/148‑1 (MQ=255)

                                                                                                                                                                                                                                        tCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGaaaa                                                                                                                                               >  4:173708/1‑136 (MQ=255)

                                                                                                                                                                                                                                        tCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGAATGCATGTTGAAGTACGCCTGAAATGGCCTCATCGGCTTTTCCCTTCGGga                           >  4:379301/1‑252 (MQ=255)

                                                                                                                                                                                                                                         ccGGCCTGAAAAGGTCGGGGAactgattatcaatgcgccgaaatcgaatgcggacaccgcggtgtgtttgcacgttttgcacatgatgattaaataggttcttcagtatgaatttatcccgtcaggaacaacataccttacacgttct                                                                                                                                  >  5:879708‑M2/1‑21 (MQ=255)

                                                                                                                                                                                                                                         ccGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTa                                                                                                                                                                                                      <  7:245222/80‑1 (MQ=255)

                                                                                                                                                                                                                                         ccGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTa                                                                                                                                                                                                      >  6:378554/1‑80 (MQ=255)

                                                                                                                                                                                                                                         ccGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTa                                                                                                                                                                                                      >  8:245222/1‑80 (MQ=255)

                                                                                                                                                                                                                                         ccGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTa                                                                                                                                                                                                      <  5:378554/80‑1 (MQ=255)

                                                                                                                                                                                                                                         ccGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGGGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGAATGCATGTTGAAGTACGCCTGAAATGGCCTCATCGGCTTTTCCCTTCGGGAGATTATTCTCCTTTTGTTAAATc    <  2:333612/274‑1 (MQ=255)

                                                                                                                                                                                                                                          cGGCCTGCAAAGGTCGGGGAAATGATTATCGGATGAGTAAAGTTTCCAGGATCAAAGCCTCGGGTGTAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGGGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGAATGCATGTTGAAGTACGCCTTAAATGGCCTCATCGGCTTTTCCCTTCGGGAGATTATTCTCCTTTTGTTAAATCCa  <  4:44633/275‑1 (MQ=255)

                                                                                                                                                                                                                                          cGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCg                                                                                                                                                                                           >  1:73629/1‑90 (MQ=255)

                                                                                                                                                                                                                                            gCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAgtg                                                                                                                                           <  2:173709/136‑1 (MQ=255)

                                                                                                                                                                                                                                             ccTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCaa                                                                                                                                                                                                                              <  5:202633/52‑1 (MQ=255)

                                                                                                                                                                                                                                             ccTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCaa                                                                                                                                                                                                                              >  6:202633/1‑52 (MQ=255)

                                                                                                                                                                                                                                             ccTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGaa                                                                                                                                                                                         >  7:333393/1‑89 (MQ=255)

                                                                                                                                                                                                                                              cTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAata                                                                                                                                                                                       <  3:73629/90‑1 (MQ=255)

                                                                                                                                                                                                                                                gAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTaa                                                                                                                                                                                   <  8:911867/92‑1 (MQ=255)

                                                                                                                                                                                                                                                 aaaaGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGt                                                                                                                                                     >  8:831275/1‑121 (MQ=255)

                                                                                                                                                                                                                                                 aaaaGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGt                                                                                                                                                     <  7:831275/121‑1 (MQ=255)

                                                                                                                                                                                                                                                       tCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGgttg                                                                                                                                                                                                                  >  5:867202/1‑54 (MQ=255)

                                                                                                                                                                                                                                                          gggAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGt                                                                                                                                                     >  8:333470/1‑112 (MQ=255)

                                                                                                                                                                                                                                                          gggAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGt                                                                                                                                                     <  7:333470/112‑1 (MQ=255)

                                                                                                                                                                                                                                                           ggAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGaa                                                                                                                            >  7:432956/1‑136 (MQ=255)

GGCGAGCGTGCAGTCGGTCAGCAACAGCCCTTCGCGGCTGTAGCATTCAACGGAAGTGACGCGGCCTGAAGAATCGCGGACGTGCGCAATACGTCTACCTTTAGCGAGAACGTGTAAGGTATGTTGTTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTCCGGCCTGAAAAGGTCGGGGAACTGATTATCGGATGATTACATTCTCCAGCATCAAAGCCTCGGGTTGAGTTGAAAGGTATTTACGGAGCGAATATTAACACGTAGTTATAGGAGGGATATGTTTCAGTAGAAAAAGTGTGATGTACTTTGGAAATTGAATGCCAACCCATTTACTGGAAAAGGCAGATGACACTGACGAATGCATGTTGAAGTACGCCTGAAATGGCCTCATCGGCTTTTCCCTTCGGGAGATTATTCTCCTTTTGTTAAATCCA  >  NC_000913/4533907‑4534415

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.