New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 183661	44 (0.470)	13 (0.150)	10/180	NT	22.5%	intergenic (+41/+48)	cdaR/yaeH	carbohydrate diacid regulon transcriptional regulator; autoregulator/UPF0325 family protein
	?	NC_000913	= 183674	50 (0.590)					intergenic (+54/+35)	cdaR/yaeH	carbohydrate diacid regulon transcriptional regulator; autoregulator/UPF0325 family protein

GTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/183505‑183661 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cattcccctcTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGTTGTAACGCCACATACAGCAGCAACCTGTCATCAAAATTGCCCAAATCAAGCCCGGTCAGTTCCGATATACGATT  <  NC_000913/183674‑183528                                                                                                                                                                                                                                                                                                                  GTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTC                                                                                                                                                              <  2:1096669/148‑1    ATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATT                                                                                                                                                           >  2:725070/1‑148        CCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCC                                                                                                                                                       <  1:725070/148‑1          TGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTC                                                                                                                                                     >  1:759888/1‑148          TGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTC                                                                                                                                                     >  4:786341/1‑148                      TTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCTACCCTTCGGGC                                                                                                                                         <  2:311644/148‑1                         ATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCTACCCTTCGGGCTGA                                                                                                                                      <  3:786341/148‑1                           CGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCTACCCTTCGGGCTGAGG                                                                                                                                    <  1:815438/148‑1                           CGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCTACCCTTCGGGCTGAGG                                                                                                                                    >  2:815438/1‑148                            GTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCTACCCTTCGGGCTGAGGG                                                                                                                                   <  3:183203/148‑1                                                      TTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCTACCCTTCGGGCTGAGGGGA                                                                                                                                 <  1:235083/124‑1                                                      TTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCTACCCTTCGGGCTGAGGGGA                                                                                                                                 >  2:235083/1‑124                                                      TTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCTACCCTTCGGGCTGAG                                                                                                                                     >  1:282973/1‑120                                                      TTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCTACCCTTCGGGCTGAG                                                                                                                                     <  2:282973/120‑1                                                           CAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTC                                                                                                                                                              <  3:989580/90‑1                                                           CAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTAAAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTC                                                                                                                                                              >  4:989580/1‑90                                                                                                  ACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCTACCCTTCGGGCTGAGGG                                                                                                                                   >  4:799157/1‑78                                                                                                  ACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCTACCCTTCGGGCTGAGGG                                                                                                                                   <  3:799157/78‑1                                                                                                       ATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCTACCCTTCGGGCTGAGG                                                                                                                                    <  3:405884/72‑1                                                                                                       ATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCTACCCTTCGGGCTGAGG                                                                                                                                    >  4:405884/1‑72                                                                                                                                                       TCCCCTCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGTTGTAACGCCACATACAGCAGCAACCTGTCATCAAAATTGCCCAAATCAAGCCCGGTCAGTTCCGATAT        <  2:395918/148‑1                                                                                                                                                        CCCCTCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGT                                                                            >  4:885596/1‑79                                                                                                                                                        CCCCTCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGT                                                                            <  3:885596/79‑1                                                                                                                                                          CCTCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACGTTAACGCATAACCTACCGCTCTTCATCCAGTTGTAACGCCACATACAGCAGCAACCTGTCATCAAAATTGC                                    >  2:954820/1‑117                                                                                                                                                          CCTCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGTTGTAACGCCACATACAGCAGCAACCTGTCATCAAAATTGCCCAA                                >  4:519652/1‑121                                                                                                                                                          CCTCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGTTGTAACGCCACATACAGCAGCAACCTGTCATCAAAATTGCCCAA                                <  3:519652/121‑1                                                                                                                                                          CCTCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGTTGTAACGCCACATACAGCAGCAACCTGTCATCAAAATTGC                                    <  1:954820/117‑1                                                                                                                                                          CCTCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGTTGTA                                                                        <  3:812752/81‑1                                                                                                                                                          CCTCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGTTGTA                                                                        >  4:812752/1‑81                                                                                                                                                          CCTCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTAC                                                                                           >  3:835700/1‑62                                                                                                                                                          CCTCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTAC                                                                                           <  4:835700/62‑1                                                                                                                                                            TCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGTTGTAACGCCACATACAGCAGCAACCTGTCATCAAAATTGCCCAAATCAAGCCCGGTCAGTTCCGATATACGAT   >  3:962760/1‑148                                                                                                                                                            TCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGTTGTAACGCCACATACAGCAGCAACCTGTCATCAAAATTGCCCAAATCAAGCCCGGTCAGTTCCGATATACGAT   <  4:193428/148‑1                                                                                                                                                            TCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGTTGTAACGCCACATACAGCAGCAACCTGTCATCAAAATTGCCCAAATCA                            >  3:728212/1‑123                                                                                                                                                            TCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGTTGTAACGCCACATACAGCAGCAACCTGTCATCAAAATTGCCCAAATCA                            <  4:728212/123‑1                                                                                                                                                             CTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGTTGTAACGCCACATACAGCAGCAACCTGTCATCAAAATTGCCCAAATCAAGCCCGGTCAGTTCCGATATACGATT  <  4:962760/148‑1                                                                                                                                                             CTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGTTGTAACGCCACATACAGCAGCAACCTGTCATCAAAATTGCCCAAATCAAGCCCGGTCAGTTCCGATATACGATT  >  4:141039/1‑148                                                                                                                                                             CTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCAT                                                                                 >  2:321243/1‑69                                                                                                                                                             CTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCAT                                                                                 <  1:321243/69‑1                                                                                                                                                                                                                                                                                                                  GTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/183505‑183661 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cattcccctcTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGTTGTAACGCCACATACAGCAGCAACCTGTCATCAAAATTGCCCAAATCAAGCCCGGTCAGTTCCGATATACGATT  <  NC_000913/183674‑183528

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.