| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 231071 = | 72 (0.770) | 17 (0.190) | 13/188 | NT | 22.0% | intergenic (‑190/‑51) | yafC/yafD | LysR family putative transcriptional regulator/endo/exonuclease/phosphatase family protein |
| ? | NC_000913 | 231095 = | 53 (0.600) | intergenic (‑214/‑27) | yafC/yafD | LysR family putative transcriptional regulator/endo/exonuclease/phosphatase family protein | |||||
GTTTTTTCGCACTTTTGACTTTGAAACCTCTATTACGTCAACCCTTCCGCACTCGGGAGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/231133‑231071‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agggttGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAGGCATTACCACCTGGGGAACCGTTAAGT > NC_000913/231095‑231238 GTTTTTTCGCACTTTTGACTTTGAAACCTCTATTACGTCAACCCTTCCGCACTCGGGAGGGTT > 3:400712/1‑63GTTTTTTCGCACTTTTGACTTTGAAACCTCTATTACGTCAACCCTTCCGCACTCGGGAGGGTT < 4:400712/63‑1 TTTCGCACTTTTGACTTTGAAACCTCTATTACGTCAACCCTTCCGCACTCGGGAGG < 4:681511/56‑1 TTTCGCACTTTTGACTTTGAAACCTCTAGTACGTCAACCCTTCCGCACTCGGGAGG > 3:681511/1‑56 CAACCCTTCCGCACTCGGGAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCC < 2:727054/140‑1 CAACCCTTCCGCACTCGGGAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGCGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCC > 1:727054/1‑140 AACCCTTCCGCACTCGGGAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAGGCATTAC > 1:829775/1‑148 ACCCTTCCGCACTCGGGAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAA > 1:783878/1‑61 ACCCTTCCGCACTCGGGAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAA < 2:783878/61‑1 CCCTTCCGCACTCGGGAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAGGCATTACCA > 2:928180/1‑148 CCCTTCCGCACTCGGGAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAA > 4:611966/1‑100 CCCTTCCGCACTCGGGAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAA < 3:611966/100‑1 CCCTTCCGCACTCGGGAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTG < 4:1115243/83‑1 CCCTTCCGCACTCGGGAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTG > 3:1115243/1‑83 CCTTCCGCACTCGGGAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCT > 2:21731/1‑120 CCTTCCGCACTCGGGAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCT < 1:21731/120‑1 CTTCCGCACTCGGGAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAA < 4:35101/57‑1 CTTCCGCACTCGGGAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAA < 2:833214/57‑1 CTTCCGCACTCGGGAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAA > 3:35101/1‑57 CTTCCGCACTCGGGAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAA > 1:833214/1‑57 TTCCGCACTCGGGAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAGGCATTACCACCT < 2:829775/148‑1 AGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAAC < 2:532828/45‑1 AGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAAC > 1:532828/1‑45 GGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAGGCATTACCACCTGGGGAACCGTTAAGT < 1:928180/148‑1 GTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAGGCATTA > 3:544580/1‑126 GTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAGGCATTA < 4:544580/126‑1 TGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGA > 2:387572/1‑67 TGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGA < 1:387572/67‑1 GTTTTTTCGCACTTTTGACTTTGAAACCTCTATTACGTCAACCCTTCCGCACTCGGGAGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/231133‑231071‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agggttGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAGGCATTACCACCTGGGGAACCGTTAAGT > NC_000913/231095‑231238 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |