New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 231071 =72 (0.770)17 (0.190) 13/188 NT 22.0% intergenic (‑190/‑51) yafC/yafD LysR family putative transcriptional regulator/endo/exonuclease/phosphatase family protein
?NC_000913 231095 = 53 (0.600)intergenic (‑214/‑27) yafC/yafD LysR family putative transcriptional regulator/endo/exonuclease/phosphatase family protein

CATGCGATTTAATGTTCTCCATAATGAGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAGGCATTACCACCTGGGGAACCGTTAAGT  >  NC_000913/230956‑231238
                                                                                                                                           |                                                                                                                                               
ggccgatgctcgcaaaagaccccggcggtaagatcctttccgcaggttgtccggcaacatagcgcatggcataggtgttttttcgcgcttttgactttgaaacctctattacgtcAACCCTCCCGAGTGCGGAAGGGTTg                                                                                                                                                 >  1:727054‑M1/116‑140 (MQ=255)
ggccgatgctcgcaaaagaccccggcggtaagatcctttccgcaggttgtccggcaacatagcgcatggcataggtgttttttcgcacttttgactttgaaacctctattacgtcAACCCTCCCGAGTGCGGAAGGGTTg                                                                                                                                                 <  2:727054‑M1/25‑1 (MQ=255)
                  ccATAATGAGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCaa                                                                                                                               >  2:154650/1‑140 (MQ=255)
                  ccATAATGAGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCaa                                                                                                                               <  1:154650/140‑1 (MQ=255)
                            cAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGaaaaa                                                                                                             <  4:577842/148‑1 (MQ=255)
                            cAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGaaaaa                                                                                                             >  3:577842/1‑148 (MQ=255)
                              aaaTTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAac                                                                                                           >  3:402181/1‑148 (MQ=255)
                                                     tGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGAc                                                                                                                                               <  3:185530/89‑1 (MQ=255)
                                                     tGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGAc                                                                                                                                               >  4:185530/1‑89 (MQ=255)
                                                       cTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCa                                                                                                                                <  2:727647/102‑1 (MQ=255)
                                                       cTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCa                                                                                                                                >  1:727647/1‑102 (MQ=255)
                                                           cATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGa                                                                                                                                                <  2:32598/82‑1 (MQ=255)
                                                           cATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGa                                                                                                                                                >  1:32598/1‑82 (MQ=255)
                                                             tAACACTATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACg                                                                                                                                              >  2:801822/1‑82 (MQ=255)
                                                             tAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACg                                                                                                                                              <  1:801822/82‑1 (MQ=255)
                                                              aaCAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCaa                                                                                                                               <  2:1122894/96‑1 (MQ=255)
                                                              aaCAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCaa                                                                                                                               >  1:1122894/1‑96 (MQ=255)
                                                               aCAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTg                                                                                                                                                 >  1:250608/1‑77 (MQ=255)
                                                               aCAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTg                                                                                                                                                 <  2:250608/77‑1 (MQ=255)
                                                               aCAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCgg                                                                                 <  2:494846/141‑1 (MQ=255)
                                                               aCAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCgg                                                                                 >  1:494846/1‑141 (MQ=255)
                                                                  atatACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAaca                                                                                                          >  1:656075/1‑113 (MQ=255)
                                                                  atatACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAaca                                                                                                          <  2:656075/113‑1 (MQ=255)
                                                                       cAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCaaa                                                                                                                        <  3:175968/94‑1 (MQ=255)
                                                                       cAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCaaa                                                                                                                        >  4:175968/1‑94 (MQ=255)
                                                                         aTTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGa                                                                                                                                                >  2:114377/1‑68 (MQ=255)
                                                                         aTTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGa                                                                                                                                                <  1:114377/68‑1 (MQ=255)
                                                                         aTTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCaa                                                                                                                               <  3:495286/85‑1 (MQ=255)
                                                                         aTTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCaa                                                                                                                               >  4:495286/1‑85 (MQ=255)
                                                                         aTTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAaca                                                                                                          >  2:292050/1‑106 (MQ=255)
                                                                         aTTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAaca                                                                                                          <  1:292050/106‑1 (MQ=255)
                                                                         aTTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGa                                                                >  2:163269/1‑148 (MQ=255)
                                                                         aTTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGa                                                                <  4:402181/148‑1 (MQ=255)
                                                                               cGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGt                                                                                                                     <  3:529014/89‑1 (MQ=255)
                                                                               cGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGt                                                                                                                     >  4:529014/1‑89 (MQ=255)
                                                                               cGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTa                                                                                                      >  4:231886/1‑104 (MQ=255)
                                                                               cGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTa                                                                                                      <  3:231886/104‑1 (MQ=255)
                                                                                  tGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGa                                                                <  2:25893/139‑1 (MQ=255)
                                                                                  tGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGa                                                                >  1:25893/1‑139 (MQ=255)
                                                                                    aaaGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATgcgc                                                                                            <  2:277834/109‑1 (MQ=255)
                                                                                    aaaGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATgcgc                                                                                            >  1:277834/1‑109 (MQ=255)
                                                                                     aaGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGTCGTAATAGAGGTTTCAAAGTCAAAAGTGCGaaaaa                                                                                                             <  4:733576/91‑1 (MQ=255)
                                                                                     aaGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGTCGTAATAGAGGTTTCAAAGTCAAAAGTGCGaaaaa                                                                                                             >  3:733576/1‑91 (MQ=255)
                                                                                        agTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGa                                                                >  4:642067/1‑133 (MQ=255)
                                                                                        agTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGa                                                                <  3:642067/133‑1 (MQ=255)
                                                                                          tGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATc                                                              >  2:464125/1‑133 (MQ=255)
                                                                                          tGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATc                                                              <  1:464125/133‑1 (MQ=255)
                                                                                             gCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATag                                                                                                                                        <  4:1007610/56‑1 (MQ=255)
                                                                                             gCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATag                                                                                                                                        >  3:1007610/1‑56 (MQ=255)
                                                                                              cTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAGGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTg                                           >  3:928187/1‑148 (MQ=255)
                                                                                              cTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGaaaaa                                                                                                             >  1:130768/1‑82 (MQ=255)
                                                                                              cTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGaaaaa                                                                                                             <  2:130768/82‑1 (MQ=255)
                                                                                               tAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGa                                                                                                                                                <  3:598099/46‑1 (MQ=255)
                                                                                               tAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGa                                                                                                                                                >  4:598099/1‑46 (MQ=255)
                                                                                                aaaaTCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGc                                                                                    <  1:235077/105‑1 (MQ=255)
                                                                                                aaaaTCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGc                                                                                    >  2:235077/1‑105 (MQ=255)
                                                                                                  aaTCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCaa                                                                                                                               >  1:708065/1‑60 (MQ=255)
                                                                                                  aaTCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCaa                                                                                                                               <  2:708065/60‑1 (MQ=255)
                                                                                                            aCAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTAt                                                                                         >  3:843285/1‑88 (MQ=255)
                                                                                                            aCAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCCATGCCATGCGCTAt                                                                                         <  4:843285/88‑1 (MQ=255)
                                                                                                                tAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAg                                                                  <  4:580570/107‑1 (MQ=255)
                                                                                                                tAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAg                                                                  >  3:580570/1‑107 (MQ=255)
                                                                                                                tAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGa                                                                <  4:675258/109‑1 (MQ=255)
                                                                                                                tAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGa                                                                >  3:675258/1‑109 (MQ=255)
                                                                                                                  caacccttccgcactcgggagggttGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGcc                               <  2:727054‑M2/115‑1 (MQ=255)
                                                                                                                  caacccttccgcactcgggagggttGACGTAATAGAGGTTTCAAAGTCAAAAGCGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGcc                               >  1:727054‑M2/26‑140 (MQ=255)
                                                                                                                   aacccttccgcactcgggagggttGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAGGCATTac                      >  1:829775‑M2/25‑148 (MQ=255)
                                                                                                                   AACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAac                                                                                                           >  3:400712‑M1/1‑63 (MQ=255)
                                                                                                                   AACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAac                                                                                                           <  4:400712‑M1/63‑1 (MQ=255)
                                                                                                                    acccttccgcactcgggagggttGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGaaaaaa                                                                                                            >  1:783878‑M2/24‑61 (MQ=255)
                                                                                                                    acccttccgcactcgggagggttGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGaaaaaa                                                                                                            <  2:783878‑M2/38‑1 (MQ=255)
                                                                                                                     cccttccgcactcgggagggttGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTg                                                                                     >  3:1115243‑M2/23‑83 (MQ=255)
                                                                                                                     cccttccgcactcgggagggttGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTg                                                                                     <  4:1115243‑M2/61‑1 (MQ=255)
                                                                                                                     cccttccgcactcgggagggttGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGaa                                                                    <  3:611966‑M2/78‑1 (MQ=255)
                                                                                                                     cccttccgcactcgggagggttGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGaa                                                                    >  4:611966‑M2/23‑100 (MQ=255)
                                                                                                                     cccttccgcactcgggagggttGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAGGCATTacca                    >  2:928180‑M2/23‑148 (MQ=255)
                                                                                                                      ccttccgcactcgggagggttGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCt                                               >  2:21731‑M2/22‑120 (MQ=255)
                                                                                                                      ccttccgcactcgggagggttGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCt                                               <  1:21731‑M2/99‑1 (MQ=255)
                                                                                                                      CCTCCCGAGTGCGGAAGGGTTGACGTACTAGAGGTTTCAAAGTCAAAAGTGCGaaa                                                                                                               >  3:681511‑M1/1‑56 (MQ=255)
                                                                                                                      CCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGaaa                                                                                                               <  4:681511‑M1/56‑1 (MQ=255)
                                                                                                                       cttccgcactcgggagggttGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGaaaaa                                                                                                             <  4:35101‑M2/37‑1 (MQ=255)
                                                                                                                       cttccgcactcgggagggttGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGaaaaa                                                                                                             >  3:35101‑M2/21‑57 (MQ=255)
                                                                                                                       cttccgcactcgggagggttGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGaaaaa                                                                                                             >  1:833214‑M2/21‑57 (MQ=255)
                                                                                                                       cttccgcactcgggagggttGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGaaaaa                                                                                                             <  2:833214‑M2/37‑1 (MQ=255)
                                                                                                                        ttccgcactcgggagggttGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAGGCATTACCACCt                 <  2:829775‑M2/129‑1 (MQ=255)
                                                                                                                         cccGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAGGCAt                         >  2:1000820/1‑139 (MQ=255)
                                                                                                                         cccGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAGGCAt                         <  1:1000820/139‑1 (MQ=255)
                                                                                                                          ccGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAGGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAGGCATTACCTCCTgg               <  4:928187/148‑1 (MQ=255)
                                                                                                                                     agggttGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAac                                                                                                           <  2:532828‑M2/39‑1 (MQ=255)
                                                                                                                                     agggttGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAac                                                                                                           >  1:532828‑M2/7‑45 (MQ=255)
                                                                                                                                       ggttGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAGGCATTACCACCTGGGGAACCGTTAAGt  <  1:928180‑M2/144‑1 (MQ=255)
                                                                                                                                        gttGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAGGCATTa                       <  4:544580‑M2/123‑1 (MQ=255)
                                                                                                                                        gttGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAGGCATTa                       >  3:544580‑M2/4‑126 (MQ=255)
                                                                                                                                          tGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGa                                                                                <  1:387572‑M2/66‑1 (MQ=255)
                                                                                                                                          tGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGa                                                                                >  2:387572‑M2/2‑67 (MQ=255)
                                                                                                                                           |                                                                                                                                               
CATGCGATTTAATGTTCTCCATAATGAGCAAAATTCTGACCGGTGTAAGCACTTGCTTACATAACAATATACAATTGCTCGTTGAAAGAGTGAGCTAAAATCCCTATAACAGTAGAACCCTCCCGAGTGCGGAAGGGTTGACGTAATAGAGGTTTCAAAGTCAAAAGTGCGAAAAAACACCTATGCCATGCGCTATGTTGCCGGACAACCTGCGGAAAGGATCTTACCGCCGGGGTCTTTTGCGAGCATCGGCCAGGCATTACCACCTGGGGAACCGTTAAGT  >  NC_000913/230956‑231238

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.