New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	893340 =	129 (1.380)	8 (0.090)	8/190	NT	6.6%	coding (384/477 nt)	ybjN	negative regulator of motility; multicopy suppressor of coaA(Ts)
	?	NC_000913	893369 =	105 (1.180)					coding (413/477 nt)	ybjN	negative regulator of motility; multicopy suppressor of coaA(Ts)

CAGATAATTTTGCAGCGCGCAGCCACTGCACCAGCGACTGCGTGCTCGAAAGGAGTTATCAGTGGAGGAAATAGTTTTCGGTAACGTTGTTTTGCCCTTCATCATCAGTCGGTAACAGCAGTTGATGGGCATTAGCTTCAAGAATGACCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/893491‑893340 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccatc‑‑AA‑CTGCTGTTACCGACTGATGATGAAGGGCAAAACAACGTTACCGAAAACTATTTCCTCCACTGATAACTCCTTTCGAGCACGCAGTCGCTGGTGCAGTGGCTGCGCGCTGCAAAATTATCTGCTGTTTTTAACCTTTTCTTAA  >  NC_000913/893369‑893512                                                                                                                                                                                                                                                                                                             CAGATAATTTTGCAGCGCGCAGCCACTGCACCAGCGACTGCGTGCTCGAAAGGAGTTATCAGTGGAGGAAATAGTTTTCGGTAACGTTGTTTTGCCCTTCATCATCAGTCGGTAACAGCAGTTGATGGGCATTAGCTTCAAGAATGAC                                                                                                                                                         >  3:771029/1‑148    ATAATTTTGCAGCGCGCAGCCACTGCACCAGCGACTGCGTGCTCGAAAGGAGTTATCAGTGGAGGAAATAGTTTTCGGTAACGTTGTTTTGCCCTTCATCATCAGTCGGTAACAGCAGTTGATGGGCATTAGCTTCAAGAATGACCAT                                                                                                                                                      >  4:175488/1‑148                                                                                                                   ACAGCAGTTGATGGACATTAGCTTCAAGAATGACCAT                                                                                                                                                      <  4:976108/37‑1                                                                                                                   ACAGCAGTTGATGGACATTAGCTTCAAGAATGACCAT                                                                                                                                                      >  3:976108/1‑37                                                                                                                    CAGCAGTTGATGGGCATTAGCTTCAAGAATGACCATCGAAATCTGCTGTTACCGACTGATGATGAAGGGCAAAACAACGTTACCGAAAACTATTTCCTCCACTGATAA                                                                              <  1:491662/108‑1                                                                                                                    CAGCAGTTGATGGGCATTAGCTTCAAGAATGACCATCGAAATCTGCTGTTACCGACTGATGATGAAGGGCAAAACAACGTTACCGAAAACTATTTCCTCCACTGATAA                                                                              >  2:491662/1‑108                                                                                                                       CAGTTGATGGGCATTAGCTTCAAGAATGACCATC‑‑AA‑CTGCTGTTACCGACTGATGATGAAGGGCAAAACAACGTTACCGAAAACTATTTCCTCCACTGATAACTCCTTTC                                                                      <  3:793789/110‑1                                                                                                                       CAGTTGATGGGCATTAGCTTCAAGAATGACCATC‑‑AA‑CTGCTGTTACCGACTGATGATGAAGGGCAAAACAACGTTACCGAAAACTATTTCCTCCACTGATAACTCCTTTC                                                                      >  4:793789/1‑110                                                                                                                         GTTGATGGGCATTAGCTTCAAGAATGACCATC‑‑AA‑CTGCTGTTACCGACTGATGATGAAGGGCAAAACAACGTTACCGAAAACTATTTCCTCCACTGATAACTCCTTTCGA                                                                    >  3:799049/1‑110                                                                                                                         GTTGATGGGCATTAGCTTCAAGAATGACCATC‑‑AA‑CTGCTGTTACCGACTGATGATGAAGGGCAAAACAACGTTACCGAAAACTATTTCCTCCACTGATAACTCCTTTCGA                                                                    <  4:799049/110‑1                                                                                                                                 GCATTAGCTTCAAGAATGACCATC‑‑AA‑CTGCTGTTACCGACTGATGATGAAGGGC                                                                                                                    <  3:472875/54‑1                                                                                                                                 GCATTAGCTTCAAGAATGACCATC‑‑AA‑CTGCTGTTACCGACTGATGATGAAGGGC                                                                                                                    >  4:472875/1‑54                                                                                                                                                     CATC‑‑AA‑CTGCTGTTACCGACTGATGATGAAGGGCAAAACAACGTTACCGAAAACTATTTCCTCCACTGATAACTCCTTTCGAGCACGCAGTCGCTGGTGCAGTGGCTGCGCGCTGCAAAATTATCTGCTGTTTTTAACCTTTTCTTAA  >  3:114009/1‑148                                                                                                                                                      ATC‑‑AA‑CTGCTGTTACCGACTGATGATGAAGGGCAAAACAACGTTACCGAAAACTATTTCCTCCACTGATAACTCCTTTCGAGCACGCAGTCGCTGGTGCAGTGGCTGCGCGCTGCAAAATTATCTGCTGTTT                 <  2:407062/132‑1                                                                                                                                                      ATC‑‑AA‑CTGCTGTTACCGACTGATGATGAAGGGCAAAACAACGTTACCGAAAACTATTTCCTCCACTGATAACTCCTTTCGAGCACGCAGTCGCTGGTGCAGTGGCTGCGCGCTGCAAAATTATCTGCTGTTT                 >  1:407062/1‑132                                                                                                                                                       TC‑‑AA‑CTGCTGTTACCGACTGATGATGAAGGGCAAAACAACGTTACCGAAAACTATTTCCTCCACTGATAACTCCTTTCGAGCACGCAGTCGCTGGTGCAGTGGCTGCGCGCTGCAAAATTATCTGCTGTTTTTA              >  2:589967/1‑134                                                                                                                                                       TC‑‑AA‑CTGCTGTTACCGACTGATGATGAAGGGCAAAACAACGTTACCGAAAACTATTTCCTCCACTGATAACTCCTTTCGAGCACGCAGTCGCTGGTGCAGTGGCTGCGCGCTGCAAAATTATCTGCTGTTTTTA              <  1:589967/134‑1                                                                                                                                                        C‑‑AA‑CTGCTGTTACCGACTGATGATGAAGGGCAAAACAACGTTACCGAAAACTATTTCCTCCACTGATAACTCCTTTCGAGCACGCAGTCGCTGGTGCAGTGGCTGCGCGCTGCAAAATTATCTGCTGTTTTTAACCTTTTCTTAA  >  2:716369/1‑145                                                                                                                                                        C‑‑AA‑CTGCTGTTACCGACTGATGATGAAGGGCAAAACAACGTTACCGAAAACTATTTCCTCCACTGATAACTCCTTTCGAGCACGCAGTCGCTGGTGCAGTGGCTGCGCGCTGCAAAATTATCTGCTGTTTTTAACCTTTTCTTAA  >  2:797426/1‑145                                                                                                                                                        C‑‑AA‑CTGCTGTTACCGACTGATGATGAAGGGCAAAACAACGTTACCGAAAACTATTTCCTCCACTGATAACTCCTTTCGAGCACGCAGTCGCTGGTGCAGTGGCTGCGCGCTGCAAAATTATCTGCTGTTTTTAACCTTTTCTTAA  <  1:797426/145‑1                                                                                                                                                        C‑‑AA‑CTGCTGTTACCGACTGATGATGAAGGGCAAAACAACGTTACCGAAAACTATTTCCTCCACTGATAACTCCTTTCGAGCACGCAGTCGCTGGTGCAGTGGCTGCGCGCTGCAAAATTATCTGCTGTTTTTAACCTTTTCTTAA  <  1:716369/145‑1                                                                                                                                                                                                                                                                                                             CAGATAATTTTGCAGCGCGCAGCCACTGCACCAGCGACTGCGTGCTCGAAAGGAGTTATCAGTGGAGGAAATAGTTTTCGGTAACGTTGTTTTGCCCTTCATCATCAGTCGGTAACAGCAGTTGATGGGCATTAGCTTCAAGAATGACCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/893491‑893340 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccatc‑‑AA‑CTGCTGTTACCGACTGATGATGAAGGGCAAAACAACGTTACCGAAAACTATTTCCTCCACTGATAACTCCTTTCGAGCACGCAGTCGCTGGTGCAGTGGCTGCGCGCTGCAAAATTATCTGCTGTTTTTAACCTTTTCTTAA  >  NC_000913/893369‑893512

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.