New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1672789 =	10 (0.110)	6 (0.070)	5/180	NT	41.4%	intergenic (+8/+31)	ydgD/mdtI	putative peptidase/multidrug efflux system transporter
	?	NC_000913	1672815 =	8 (0.100)					intergenic (+34/+5)	ydgD/mdtI	putative peptidase/multidrug efflux system transporter

CTGCCCGCGCTGTCGGGCAGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1672811‑1672789 ‑‑‑‑‑‑‑‑‑‑‑‑‑cgggcagcgtCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAACGTGGCGGCAATACCAAACCCGCCCCACAATGCATAA  >  NC_000913/1672815‑1672958                                                                                                                                                                         CTGCCCGCGCTGTCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGA                                                                                                                         >  3:592309/1‑48 CTGCCCGCGCTGTCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGA                                                                                                                         <  4:592309/48‑1 CTGCCCGCGCTGTCGGGCAGCGTCTTCATCAGGCAAGTTTC                                                                                                                                <  3:703517/41‑1 CTGCCCGCGCTGTCGGGCAGCGTCTTCATCAGGCAAGTTTC                                                                                                                                >  4:703517/1‑41      CGCGCTGTCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGC                                          <  3:439390/122‑1      CGCGCTGTCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGC                                          >  4:439390/1‑122                    GCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAACGTGGCGGCAATACCAAACCCGCCCCACAATGCATAA  >  3:998838/1‑148                                                                                                                                                                         CTGCCCGCGCTGTCGGGCAGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1672811‑1672789 ‑‑‑‑‑‑‑‑‑‑‑‑‑cgggcagcgtCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAACGTGGCGGCAATACCAAACCCGCCCCACAATGCATAA  >  NC_000913/1672815‑1672958

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.