| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1672789 = | 10 (0.110) | 6 (0.070) | 5/180 | NT | 41.4% | intergenic (+8/+31) | ydgD/mdtI | putative peptidase/multidrug efflux system transporter |
| ? | NC_000913 | 1672815 = | 8 (0.100) | intergenic (+34/+5) | ydgD/mdtI | putative peptidase/multidrug efflux system transporter | |||||
TGCATACCGATGACGGCTGGCAATTAATTGGGGTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGC > NC_000913/1672645‑1672875 | ttatgcattgtggggcgggtttggtattgccgccacgttagccgcaggttggatcttgtttggtcaacggttaaatcgtaaaggctggattggcctggtcttgctgttggctggaatgatcatggtgaaacttgcctgatgaagACGc > 3:998838‑M1/145‑148 (MQ=255) ttCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGCTAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATCATGTTCAAACGc < 4:736764/108‑1 (MQ=255) ttCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGc > 3:736764/1‑108 (MQ=255) gccgcaggttggatcttgtttggtcaacggttaaatcgtaaaggctggattggcctggtcttgctgttggctggaatgatcatggtgaaacttgcctgatgaagACGCTGCCCGACAGcgcg > 4:439390‑M1/105‑122 (MQ=255) gccgcaggttggatcttgtttggtcaacggttaaatcgtaaaggctggattggcctggtcttgctgttggctggaatgatcatggtgaaacttgcctgatgaagACGCTGCCCGACAGcgcg < 3:439390‑M1/18‑1 (MQ=255) cgAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTg > 1:632184/1‑96 (MQ=255) cgAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTg < 2:632184/96‑1 (MQ=255) cgAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTg < 4:399358/96‑1 (MQ=255) cgAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTg > 3:399358/1‑96 (MQ=255) tGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTg > 4:97714/1‑85 (MQ=255) tGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTg < 3:97714/85‑1 (MQ=255) ccGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAgg > 2:355480/1‑125 (MQ=255) ccGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAgg < 1:355480/125‑1 (MQ=255) ttttCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCaaa < 2:94600/45‑1 (MQ=255) ctttCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCaaa > 1:94600/2‑45 (MQ=255) tcatggtgaaacttgcctgatgaagACGCTGCCCGACAGCGCGGGCAg > 3:592309‑M1/26‑48 (MQ=255) tcatggtgaaacttgcctgatgaagACGCTGCCCGACAGCGCGGGCAg < 4:592309‑M1/23‑1 (MQ=255) gaaacttgcctgatgaagACGCTGCCCGACAGCGCGGGCAg < 3:703517‑M1/23‑1 (MQ=255) gaaacttgcctgatgaagACGCTGCCCGACAGCGCGGGCAg > 4:703517‑M1/19‑41 (MQ=255) aaaaTAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGc > 3:286644/1‑101 (MQ=255) aaaaTAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGc < 4:286644/101‑1 (MQ=255) | TGCATACCGATGACGGCTGGCAATTAATTGGGGTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGC > NC_000913/1672645‑1672875 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |