| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1682065 | 82 (0.880) | 8 (0.090) | 6/186 | NT | 9.3% | intergenic (‑35/‑94) | ydgC/rstA | GlpM family inner membrane protein/response regulator of RstAB two‑component system |
| ? | NC_000913 | = 1682073 | 79 (0.910) | intergenic (‑43/‑86) | ydgC/rstA | GlpM family inner membrane protein/response regulator of RstAB two‑component system | |||||
GGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1681933‑1682065‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatcagGTATTCTACTGATGACTTGTTATGGAAGTGTTAAGGTAAAAAGATGGGGCTGGTAATCAAAGCCGCGCTCGGTGCGCTGGTAGTGCTGTTGATTGGTG < NC_000913/1682073‑1681976 GGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGGTATTCTACTGATGA < 3:233030/148‑1GGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGGTATTCTACTGATGA > 4:233030/1‑148 ATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATC > 1:490574/1‑108 ATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATC < 2:490574/108‑1 ACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGGTATTCTACTGATGACTTG > 1:589168/1‑92 ACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGGTATTCTACTGATGACTTG < 2:589168/92‑1 TTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGGTATTCTACTGATG > 3:1103206/1‑66 TTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGGTATTCTACTGATG > 3:324590/1‑66 TTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGGTATTCTACTGATG < 4:1103206/66‑1 TTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGGTATTCTACTGATG < 4:324590/66‑1 ATCAGGTATTCTACTGATGACTTGTTATGGAAGTGTTAAGGTAAAAAGATGGGGCTGGTAATCAAAGCCGCGCTCGGTGCGCTGGT > 1:434343/1‑86 ATCAGGTATTCTACTGATGACTTGTTATGGAAGTGTTAAGGTAAAAAGATGGGGCTGGTAATCAAAGCCGCGCTCGGTGCGCTGGT < 2:434343/86‑1 CAGGTATTCTACTGATGACTTGTTATGGAAGTGTTAAGGTAAAAAGATGGGGCTGGTA > 1:162611/1‑58 CAGGTATTCTACTGATGACTTGTTATGGAAGTGTTAAGGTAAAAAGATGGGGCTGGTA < 2:162611/58‑1 GGTATTCTACTGATGACTTGTTATGGAAGTGTTAAGGTAAAAAGATGGGGCTGGTAATCAAAGCCGCGCTCGGTGCGCTGGTAGTGCTGTTGATTGGTG < 3:363921/99‑1 GGTATTCTACTGATGACTTGTTATGGAAGTGTTAAGGTAAAAAGATGGGGCTGGTAATCAAAGCCGCGCTCGGTGCGCTGGTAGTGCTGTTGATTGGTG > 4:363921/1‑99 GGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1681933‑1682065‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatcagGTATTCTACTGATGACTTGTTATGGAAGTGTTAAGGTAAAAAGATGGGGCTGGTAATCAAAGCCGCGCTCGGTGCGCTGGTAGTGCTGTTGATTGGTG < NC_000913/1682073‑1681976 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |