| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3836447 | 315 (3.370) | 20 (0.230) | 15/188 | NT | 5.9% | pseudogene (23/132 nt) | yicT | pseudogene |
| ? | NC_000913 | = 3836459 | 340 (3.870) | pseudogene (35/132 nt) | yicT | pseudogene | |||||
GACTCCTGTGATCTTCCGCCAAAATGCCTCTCCTGACGTTCTCCAACCCCTTGTAATACTGTCAATCCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3836296‑3836447‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagaaCCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACCAGGTATTCCTGAAGCCGATTGAATATTGAGCAGTAGAAAATATCTGGATTGACAGTATTACAAGGGGTTGGAGAACGTCAGGAGAGGCATTTTGG < NC_000913/3836459‑3836314 GACTCCTGTGATCTTCCGCCAAAATGCCTCTCCTGACGTTCTCCAACCCCTTGTAATACTGTCAATCCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGA < 3:487032/148‑1 CCTGTGATCTTCCGCCAAAATGCCTCTCCTGACGTTCTCCAACCCCTTGTAATACTGTCAATCCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAA > 1:17932/1‑148 CCTGTGATCTTCCGCCAAAATGCCTCTCCTGACGTTCTCCAACCCCTTGTAATACTGTCAATCCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAA > 3:798599/1‑148 CCTGTGATCTTCCGCCAAAATGCCTCTCCTGACGTTCTCCAACCCCTTGTAATACTGTCAATCCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGA < 3:277941/144‑1 CCTGTGATCTTCCGCCAAAATGCCTCTCCTGACGTTCTCCAACCCCTTGTAATACTGTCAATCCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGA > 4:277941/1‑144 GATCTTCCGCCAAAATGCCTCTCCTGACGTTCTCCAACCCCTTGTAATACTGTCAATCCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGA < 2:579154/139‑1 GATCTTCCGCCAAAATGCCTCTCCTGACGTTCTCCAACCCCTTGTAATACTGTCAATCCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGA > 1:579154/1‑139 TCCGCCAAAATGCCTCTCCTGACGTTCTCCAACCCCTTGTAATACTGTCAATCCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAA > 3:675804/1‑138 TCCGCCAAAATGCCTCTCCTGACGTTCTCCAACCCCTTGTAATACTGTCAATCCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAA < 4:675804/138‑1 CCAAAATGCCTCTCCTGACGTTCTCCAACCCCTTGTAATACTGTCAATCCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTG > 2:876160/1‑129 CCAAAATGCCTCTCCTGACGTTCTCCAACCCCTTGTAATACTGTCAATCCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTG < 1:876160/129‑1 TCTCCTGACGTTCTCCAACCCCTTGTAATACTGTCAATCCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGA < 4:835731/120‑1 TCTCCTGACGTTCTCCAACCCCTTGTAATACTGTCAATCCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGA > 3:835731/1‑120 ACCCCTTGTAATACTGTCAATCCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGA > 3:75450/1‑103 ACCCCTTGTAATACTGTCAATCCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGA < 4:75450/103‑1 CCCTTGTAATACTGTCAATCCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAACCGACAGGCGGATTCTTCA > 4:360088/1‑124 CCCTTGTAATACTGTCAATCCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAACCGACAGGCGGATTCTTCA < 3:360088/124‑1 TTGTAATACTGTCAATCCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAACCGACAGGCGGATTCTT > 3:534007/1‑119 TTGTAATACTGTCAATCCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAACCGACAGGCGGATTCTT < 4:534007/119‑1 TCAATCCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAA > 1:922888/1‑91 TCAATCCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAA < 2:922888/91‑1 CAATCCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGA > 1:877177/1‑86 CAATCCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGA < 2:877177/86‑1 CAATCCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGA > 1:563977/1‑86 CAATCCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGA < 2:563977/86‑1 TCCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAACCGACAGGCGGATTCTT < 3:131084/104‑1 TCCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAACCGACAGGCGGATTCTT > 4:131084/1‑104 CCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAACCGACAGGCGGATTC < 4:1024034/101‑1 CCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAACCGACAGGCGGATTC > 3:1024034/1‑101 CCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGA < 1:283266/82‑1 CCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGA > 2:283266/1‑82 TCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAACCGACAGGCGGATTCT < 3:466551/92‑1 TCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAACCGACAGGCGGATTCT > 4:466551/1‑92 ATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGA > 4:295837/1‑61 ATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGA < 3:295837/61‑1 ATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCAGAAGAACCGACAGGCGGATTCTTCAGC > 3:578176/1‑86 ATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCAGAAGAACCGACAGGCGGATTCTTCAGC < 4:578176/86‑1 TCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGA > 3:96056/1‑57 TCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGA < 4:96056/57‑1 ATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAACCGACAGGCGGATTC > 1:93699/1‑73 ATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAACCGACAGGCGGATTC < 2:93699/73‑1 GGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAA < 4:513260/55‑1 GGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAA > 3:513260/1‑55 CAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAACCGACAGGCGGATTCTTC < 1:427181/68‑1 CAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAACCGACAGGCGGATTCTTC > 2:427181/1‑68 CAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAACCGACAGGCGGATTCTTC < 1:87575/68‑1 CAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAACCGACAGGCGGATTCTTC > 2:87575/1‑68 TGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAACCGACAGGCGGATTC < 1:540377/55‑1 TGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAACCGACAGGCGGATTC > 2:540377/1‑55 GAAGAACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACCAGGTATTCCTGAAGCCGATTGAATATTGAGCAGTAGAAAATATCTGGATTGACAGTATTACAAGGGGTTGGAGAACGTCAGGAGA < 3:825206/142‑1 GAAGAACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACCAGGTATTCCTGAAGCCGATTGAATATTGAGCAGTAGAAAATATCTGGATTGACAGTATTACAAGGGGTTGGAGAACGTCAGGAGA > 4:825206/1‑142 GAAGAACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTT < 4:402984/52‑1 GAAGAACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTT > 3:402984/1‑52 AAGAACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACCAGGTATTCCTGAAGCCGATTGAATATTGAGCAGTAGAAAATATCTGGATTGACAGTATTACAAGGGGTTGGAGAACGTCAGGAGAG > 3:116371/1‑142 AAGAACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACCAGGTATTCCTGAAGCCGATTGAATATTGAGCAGTAGAAAATATCTGGATTGACAGTATTACAAGGGGTTGGAGAACGTCAGGAGAG < 4:116371/142‑1 AGAACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACCAGGTATTCCTGAAGCCGATTGAATATTGAGCAGTAGAAAATATCTGGATTGACAGTATTACAAGGGGTTGGAGAACGTCAGGAGAGGCATTTT > 2:17932/1‑148 AGAACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACCAGGTATTCCTGAAGCCGATTGAATATTGAGCAGTAGAAAATATCTGGATTGACAGTATTACAAGGGGTTGGAGAA < 4:175995/130‑1 AGAACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACCAGGTATTCCTGAAGCCGATTGAATATTGAGCAGTAGAAAATATCTGGATTGACAGTATTACAAGGGGTTGGAGAA > 3:175995/1‑130 AGAACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACCAGGTATTCCTGAAGCCGATTGAATATTGAGCAGTAGAAAATATCTGGATTGACAGTAT > 3:95133/1‑113 AGAACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACCAGGTATTCCTGAAGCCGATTGAATATTGAGCAGTAGAAAATATCTGGATTGACAGTAT < 4:95133/113‑1 AGAACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACCAGGTATTCCTGAAGCCGATTGAATATTGAGCAGTAGAAAATATCTGGATTG < 2:411977/106‑1 AGAACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACCAGGTATTCCTGAAGCCGATTGAATATTGAGCAGTAGAAAATATCTGGATTG > 1:411977/1‑106 AGAACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACCAGGTATTCCTGAAGCCGATTGAATATTGAGC < 1:435635/86‑1 AGAACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACCAGGTATTCCTGAAGCCGATTGAATATTGAGC > 2:435635/1‑86 AGAACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACCAGGTATTCCTGAAGCCGATTGA < 4:654334/77‑1 AGAACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACCAGGTATTCCTGAAGCCGATTGA > 3:654334/1‑77 AGAACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACCAG < 2:667348/57‑1 AGAACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACCAG > 1:667348/1‑57 AGAACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACC > 1:356434/1‑55 AGAACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACC < 2:356434/55‑1 AACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACCAGGTATTCCTGAAGCCGATTGAATATTGAGCAGTAGAAAATATCTGGATTGACAGTATTACAAGGGGTTGGAGAACGTCAGGAGAGGCATTTTGG < 2:190444/148‑1 AACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACCAGGTATTCCTGAAGCCGATTGAATATTGAGCAGTAGAAAATATCTGGATTGACAGTATTACAAGGGGTTGGAGAACGTC > 1:7772/1‑132 AACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACCAGGTATTCCTGAAGCCGATTGAATATTGAGCAGTAGAAAATATCTGGATTGACAGTATTACAAGGGGTTGGAGAACGTC < 2:7772/132‑1 AACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACCAGGTATTCCTGAAGCCGATTGAATATTGAGCAGTAGAAAATA > 4:607437/1‑95 AACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACCAGGTATTCCTGAAGCCGATTGAATATTGAGCAGTAGAAAATA < 3:607437/95‑1 ACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACCAGGTATTCCTGAAGCCGATTGAATATTGAGCAGTAGAAAATATCTGGATTGACAGTATTACAAGGGGTTGGAGAACGTCA > 4:338551/1‑132 ACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACCAGGTATTCCTGAAGCCGATTGAATATTGAGCAGTAGAAAATATCTGGATTGACAGTATTACAAGGGGTTGGAGAACGTCA < 3:338551/132‑1 ACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACCAGGTATTCCTGAAGCCGATTGAATATTGAGCAGTAGAAAATATC < 3:913007/96‑1 ACCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACCAGGTATTCCTGAAGCCGATTGAATATTGAGCAGTAGAAAATATC > 4:913007/1‑96 GACTCCTGTGATCTTCCGCCAAAATGCCTCTCCTGACGTTCTCCAACCCCTTGTAATACTGTCAATCCAGATATTTTCTACTGCTCAATATTCAATCGGCTTCAGGAATACCTGGTCTAAGGTTTTGTGATGGACGATGAGCGGCTGAAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3836296‑3836447‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagaaCCGACAGGCGGATTCTTCAGCCGCTCATCGTCCATCACAAAACCTTAGACCAGGTATTCCTGAAGCCGATTGAATATTGAGCAGTAGAAAATATCTGGATTGACAGTATTACAAGGGGTTGGAGAACGTCAGGAGAGGCATTTTGG < NC_000913/3836459‑3836314 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |