BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	291960 =	139 (1.490)	9 (0.100)	6/184	NT	6.8%	pseudogene (557/828 nt)	yagJ	CP4‑6 prophage; uncharacterized protein;Phage or Prophage Related
*	?	NC_000913	291982 =	119 (1.390)	9 (0.100)	6/184	NT	6.8%	pseudogene (579/828 nt)	yagJ	CP4‑6 prophage; uncharacterized protein;Phage or Prophage Related

Only 100 of 179 total aligned reads displayed.

TGAACCATTGGGAAACCAAGGTTTTTGAGATCGAAACCAAACGTGAAGGATTTGCTTTCTGGTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGATGCTTTGCCCAAACTGGAAGGACTTGCGCTATATGCCGAACATCATTCTGATGCTTACAGGCGAAT  >  NC_000913/291813‑292098

      aTTGGGAAACCAAGGTTTTTGAGATCGAAACCAAACGTGAAGGATTTGCTTTCTGGTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTc                                                                                                                                           <  4:954599/143‑1 (MQ=255)

       ttGGGAAACCAAGGTTTTTGAGATCGAAACCAAACGTGAAGGATTTGCTTTCTGGTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTc                                                                                                                                     >  4:534837/1‑148 (MQ=255)

        tGGGAAACCAAGGTTTTTGAGATCGAAACCAAACGTGAAGGATTTGCTTTCTGGTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCt                                                                                                                                    >  3:1064244/1‑148 (MQ=255)

          ttacttcggcgacagattcgattcgcctgtaagcatcagaatgatgttcggcatatagcgcaagtccttccagtttgggcaaagcatcagccagatgtaggctatgtggatctaccaggtccacaaccattttgccaTCCTGTTCttt                                                                                                                                  <  2:818598‑M1/11‑1 (MQ=255)

          ggAAACCAAGGTTTTTGAGATCGAAACCAAACGTGAAGGATTTGCTTTCTGGTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCttt                                                                                                                                  <  4:1064244/148‑1 (MQ=255)

           gAAACCAAGGTTTTTGAGATCGAAACCAAACGTGAAGGATTTGCTTTCTGGTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTg                                                                                                                                 <  3:508635/148‑1 (MQ=255)

                 aaGGTTTTTGAGATCGAAACCAAACGTGAAGGATTTGCTTTCTGGTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAAc                                                                                                                           <  3:534837/148‑1 (MQ=255)

                              tCGAAACCAAACGTGAAGGATTTGCTTTCTGGTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAAt                                                                                                              >  3:909337/1‑148 (MQ=255)

                              tCGAAACCAAACGTGAAGGATTTGCTTTCTGGTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAAt                                                                                                              >  1:912903/1‑148 (MQ=255)

                                 aaaCCAAACGTGAAGGATTTGCTTTCTGGTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGa                                                                                                                       <  3:80511/136‑1 (MQ=255)

                                 aaaCCAAACGTGAAGGATTTGCTTTCTGGTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGa                                                                                                                       >  4:80511/1‑136 (MQ=255)

                                  aaCCAAACGTGAAGGATTTGCTTTCTGGTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAgg                                                                                                                        >  1:81669/1‑134 (MQ=255)

                                   aCCAAACGTGAAGGATTTGCTTTCTGGTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTtg                                                                                                         <  4:909337/148‑1 (MQ=255)

                                      aaaCGTGAAGGATTTGCTTTCTGGTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGAttt                                                                                                                                            >  1:310149/1‑110 (MQ=255)

                                      aaaCGTGAAGGATTTGCTTTCTGGTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGAttt                                                                                                                                            <  2:310149/110‑1 (MQ=255)

                                       aaCGTGAAGGATTTGCTTTCTGGTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGc                                                                                                                                <  1:196351/121‑1 (MQ=255)

                                         cGTGAAGGATTTGCTTTCTGGTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCtt                                                                                                                                   <  1:1013874/116‑1 (MQ=255)

                                         cGTGAAGGATTTGCTTTCTGGTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCtt                                                                                                                                   >  2:1013874/1‑116 (MQ=255)

                                         cGTGAAGGATTTGCTTTCTGGTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGAcc                                                                                                   <  3:1040021/148‑1 (MQ=255)

                                          gcatcagaatgatgttcggcatatagcgcaagtccttccagtttgggcaaagcatcagccagatgtaggctatgtggatctaccaggtccacaaccattttgccat                                                                                                                                            <  4:1127522‑M1/1‑1 (MQ=255)

                                            gAAGGATTTGCTTTCTGGTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCtt                                                                                                                                   >  1:677926/1‑113 (MQ=255)

                                             tcagaatgatgttcggcatatagcgcaagtccttccagtttgggcaaagcatcagccagatgtaggctatgtggatctaccaggtccacaaccattttgccaTc                                                                                                                                           >  2:505863‑M1/103‑104 (MQ=255)

                                             tcagaatgatgttcggcatatagcgcaagtccttccagtttgggcaaagcatcagccagatgtaggctatgtggatctaccaggtccacaaccattttgccaTc                                                                                                                                           <  1:505863‑M1/2‑1 (MQ=255)

                                              cagaatgatgttcggcatatagcgcaagtccttccagtttgggcaaagcatcagccagatgtaggctatgtggatctaccaggtccacaaccattttgccaTCCTGTTCTTTGCCGAACAGGAt                                                                                                                      <  2:602155‑M1/23‑1 (MQ=255)

                                              cagaatgatgttcggcatatagcgcaagtccttccagtttgggcaaagcatcagccagatgtaggctatgtggatctaccaggtccacaaccattttgccaTCCTGTTCTTTGCCGAACAGGAt                                                                                                                      <  2:22342‑M1/23‑1 (MQ=255)

                                                 aTTTGCTTTCTGGTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCtt                                                                                                                                   <  1:230237/108‑1 (MQ=255)

                                                 aTTTGCTTTCTGGTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCtt                                                                                                                                   <  2:194423/108‑1 (MQ=255)

                                                 aTTTGCTTTCTGGTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCtt                                                                                                                                   >  2:230237/1‑108 (MQ=255)

                                                 aTTTGCTTTCTGGTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCAGATTTCCTGTTCtt                                                                                                                                   >  1:194423/1‑108 (MQ=255)

                                                  atgatgttcggcatatagcgcaagtccttccagtttgggcaaagcatcagccagatgtaggctatgtggatctaccaggtccacaaccattttgccaTc                                                                                                                                           <  3:185421‑M1/2‑1 (MQ=255)

                                                  atgatgttcggcatatagcgcaagtccttccagtttgggcaaagcatcagccagatgtaggctatgtggatctaccaggtccacaaccattttgccaTc                                                                                                                                           >  4:185421‑M1/98‑99 (MQ=255)

                                                   ttGCTTTCTGGTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATgg                                                                                                            >  3:528985/1‑129 (MQ=255)

                                                        ttCTGGTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCt                                                                                                                                    >  1:444130/1‑100 (MQ=255)

                                                        ttCTGGTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCt                                                                                                                                    <  2:444130/100‑1 (MQ=255)

                                                           tGGTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGcc                                                                                 <  4:853463/148‑1 (MQ=255)

                                                            ggTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCt                                                                                >  4:364493/1‑148 (MQ=255)

                                                              tATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTAc                                                                              >  2:693712/1‑148 (MQ=255)

                                                                tCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGt                                                                                                           <  3:845763/117‑1 (MQ=255)

                                                                 cGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTg                                                                                                 <  2:704148/126‑1 (MQ=255)

                                                                 cGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTg                                                                                                 >  1:704148/1‑126 (MQ=255)

                                                                    aaTCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGaa                                                                                                                            <  4:644803/96‑1 (MQ=255)

                                                                      tCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCt                                                                                >  2:857079/1‑138 (MQ=255)

                                                                       ccACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCttt                                                                                                                                  <  2:531241/87‑1 (MQ=255)

                                                                       ccACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTtg                                                                                                         >  2:503085/1‑112 (MQ=255)

                                                                       ccACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTtg                                                                                                         <  1:503085/112‑1 (MQ=255)

                                                                        cacaGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGTCAAAATGGt                                                                                                           >  3:942328/1‑109 (MQ=255)

                                                                        cacaGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGt                                                                                                           <  4:942328/109‑1 (MQ=255)

                                                                        cacaGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGa                                                                    >  3:268283/1‑148 (MQ=255)

                                                                          caGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGATg                                                                  >  2:76889/1‑148 (MQ=255)

                                                                             tACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGATGCtt                                                               <  1:631599/148‑1 (MQ=255)

                                                                             tACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGATGCtt                                                               >  2:907730/1‑148 (MQ=255)

                                                                                 caGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGcc                                                                                                                               >  2:475166/1‑80 (MQ=255)

                                                                                 caGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGcc                                                                                                                               <  1:475166/80‑1 (MQ=255)

                                                                                 caGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGATGCTTTGcc                                                           <  4:268283/148‑1 (MQ=255)

                                                                                 caGGGCAGTCGTCACTGGGAAACGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGATGCTTTGcc                                                           <  4:825100/148‑1 (MQ=255)

                                                                                   gggCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGAcc                                                                                                   <  2:1095477/106‑1 (MQ=255)

                                                                                   gggCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGAcc                                                                                                   >  1:1095477/1‑106 (MQ=255)

                                                                                   gggCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATc                                                                                          <  2:643827/115‑1 (MQ=255)

                                                                                   gggCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGATGCTTTGCCCa                                                         >  3:325123/1‑148 (MQ=255)

                                                                                    ggCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCaaaa                                                                                                               >  1:83427/1‑93 (MQ=255)

                                                                                      cAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGAcc                                                                                                   <  4:514273/103‑1 (MQ=255)

                                                                                         caaagcatcagccagatgtaggctatgtggatctaccaggtccacaaccattttgccaTCCTGTTc                                                                                                                                     >  4:619382‑M1/59‑66 (MQ=255)

                                                                                         caaagcatcagccagatgtaggctatgtggatctaccaggtccacaaccattttgccaTCCTGTTc                                                                                                                                     <  3:619382‑M1/8‑1 (MQ=255)

                                                                                             cACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGATGCTTTGCCCAAACTGGa                                                  >  4:479855/1‑145 (MQ=255)

                                                                                             cACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGATGCTTTGCCCAAACTGGa                                                  <  3:479855/145‑1 (MQ=255)

                                                                                              aCTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGATGCTTTGCCCAAACTGGAAGGa                                              <  3:1085622/148‑1 (MQ=255)

                                                                                                tGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGATGCTTTGCCCAAACTGGAAGGACt                                            >  3:998971/1‑148 (MQ=255)

                                                                                                 gggAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGATGCTTTGCCCAAACTGGAAGGACtt                                           >  4:605408/1‑148 (MQ=255)

                                                                                                   gAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGATGCTTTGCCCAAACTGGAAGGACTTg                                          <  1:400594/147‑1 (MQ=255)

                                                                                                   gAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGATGCTTTGCCCAAACTGGAAGGACTTg                                          >  2:400594/1‑147 (MQ=255)

                                                                                                       gatgtaggctatgtggatctaccaggtccacaaccattttgccaTc                                                                                                                                           <  1:727163‑M1/2‑1 (MQ=255)

                                                                                                          ttATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGAt                                                                                           >  4:426503/1‑91 (MQ=255)

                                                                                                           tATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGATGCTTTGCCCAAACTGGAAGGACTTGCGCTATATg                                 <  1:788312/148‑1 (MQ=255)

                                                                                                              gTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGAcc                                                                                                   <  2:130533/79‑1 (MQ=255)

                                                                                                              gTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGAcc                                                                                                   >  1:130533/1‑79 (MQ=255)

                                                                                                               ttGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGa                                                                                                                       >  3:82112/1‑58 (MQ=255)

                                                                                                                  aaGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGt                                                                                               >  4:1130108/1‑79 (MQ=255)

                                                                                                                  aaGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGt                                                                                               <  3:1130108/79‑1 (MQ=255)

                                                                                                                  aaGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGATGCTTTGCCCAAACTg                                                    >  1:889620/1‑122 (MQ=255)

                                                                                                                   gtggatctaccaggtccacaaccattttgccaTCCTGTTCTTTGCCGAAc                                                                                                                           <  3:856557‑M1/18‑1 (MQ=255)

                                                                                                                   gtggatctaccaggtccacaaccattttgccaTCCTGTTCTTTGCCGAAc                                                                                                                           >  4:856557‑M1/33‑50 (MQ=255)

                                                                                                                   aGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCt                                                                                                  >  1:938478/1‑75 (MQ=255)

                                                                                                                   aGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCt                                                                                                  <  2:938478/75‑1 (MQ=255)

                                                                                                                     cTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGATGCTTTGCCCAAACTGGAAGGACTTGCGCTATATGCCGAAcatca                       >  1:854890/1‑148 (MQ=255)

                                                                                                                      tGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGTCTGATGCTTTGCCCAAACTGGAAGGACTTGCGCTATATGCCGAAcatcat                      <  2:854890/148‑1 (MQ=255)

                                                                                                                      tGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGATGCTTTGCCCAAACTGGAAGGACTTGCGCTATATGCCGAAcatcat                      <  3:605408/148‑1 (MQ=255)

                                                                                                                       gAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGATGCTTTGCCCAAACTGGAAGGACTTGCGCTATATGCCGAACATCAtt                     <  2:800153/148‑1 (MQ=255)

                                                                                                                          cAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGATGCTTTGCCCAAACTGGAAGGACTTGCGCTATATGCCGAACATCATTCTg                  >  1:54092/1‑148 (MQ=255)

                                                                                                                                 aGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGAc                                                                                                    >  3:691667/1‑59 (MQ=255)

                                                                                                                                 aGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGATGCTTTGCCCAAACTGGAAGGa                                              <  2:348983/113‑1 (MQ=255)

                                                                                                                                 aGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGATGCTTTGCCCAAACTGGAAGGa                                              >  1:348983/1‑113 (MQ=255)

                                                                                                                                 aGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGATGCTTTGCCCAAACTGGAAGGACTTGCGCTATATGCCGAACATCATTCTGATGCTTa           >  1:380599/1‑148 (MQ=255)

                                                                                                                                   aTTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGATGCTTTGCCCAAACTGGaa                                                 <  2:398126/108‑1 (MQ=255)

                                                                                                                                    ttGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGATGCTTTGCCCAAACTGGAAGGACTTgcg                                        <  4:73138/116‑1 (MQ=255)

                                                                                                                                    ttGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGATGCTTTGCCCAAACTGGAAGGACTTGCGCta                                     <  3:395367/119‑1 (MQ=255)

                                                                                                                                            cccGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGAt                                                                   >  3:942674/1‑81 (MQ=255)

                                                                                                                                              cGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCcaca                                                                                      <  2:1050330/60‑1 (MQ=255)

                                                                                                                                              cGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCcaca                                                                                      >  1:1050330/1‑60 (MQ=255)

                                                                                                                                              cGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGATGCTTTGCCCAAACTGGAAGGACTTGCGCTATATGCCGAACATCATTCTGa                 >  2:267141/1‑129 (MQ=255)

                                                                                                                                              cGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGATGCTTTGCCCAAACTGGAAGGACTTGCGCTATATGCCGAACATCATTCTGa                 <  1:267141/129‑1 (MQ=255)

TGAACCATTGGGAAACCAAGGTTTTTGAGATCGAAACCAAACGTGAAGGATTTGCTTTCTGGTATCGTAATCCACAGTACACAGGGCAGTCGTCACTGGGAATCGCTTATGTTGAAGCTGAACAGTACAAGATTGTTCGTCCCGATTTCCTGTTCTTTGCCGAACAGGATGGCAAAATGGTTGTGGACCTGGTAGATCCACATAGCCTACATCTGGCTGATGCTTTGCCCAAACTGGAAGGACTTGCGCTATATGCCGAACATCATTCTGATGCTTACAGGCGAAT  >  NC_000913/291813‑292098

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.