New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 632148	NA (NA)	8 (0.090)	6/184	NT	NA	noncoding (34/34 nt)	REP55 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP55 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	2673806 =	NA (NA)					noncoding (31/34 nt)	REP185 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP185 (repetitive extragenic palindromic) element; contains 1 REP sequences

CCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGATAGCATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTATGCCTGATTACGACAACTATGTCGAACATATGCGGGTTAACCAT  >  NC_000913/632059‑632289                                                                                          |                                                                                                                                              cccTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGATAGCATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTCTTTCAGCaa                                                                                                                                  <  4:674548/103‑1 (MQ=255) cccTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGATAGCATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTCTTTCAGCaa                                                                                                                                  >  3:674548/1‑103 (MQ=255)         ctctCCCCAGTGGGGCGAGGGGACTGACCGAGCGCGTTGATAGCATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGt                                                                                                          >  4:1113561/1‑119 (MQ=255)         ctctCCCCAGTGGGGCGAGGGGACTGACCGAGCGCGTTGATAGCATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGt                                                                                                          <  3:1113561/119‑1 (MQ=255)          tctcCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGATAGCATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAGCgg                                                                                                                      <  4:1140843/106‑1 (MQ=255)          tctcCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGATAGCATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAGCgg                                                                                                                      >  3:1140843/1‑106 (MQ=255)                         gAGGGGACTGACCGAGCGCGTTGATAGCATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGa                                                             <  1:1079109/148‑1 (MQ=255)                             ggACTGACCGAGCGCGTTGATAGCATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACt                                                                                                >  3:616934/1‑109 (MQ=255)                             ggACTGACCGAGCGCGTTGATAGCATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACt                                                                                                <  4:616934/109‑1 (MQ=255)                               aCTGACCGAGCGCGTTGATAGCATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAg                                                                                                                         <  4:294859/82‑1 (MQ=255)                               aCTGACCGAGCGCGTTGATAGCATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAg                                                                                                                         >  3:294859/1‑82 (MQ=255)                                             ttGATAGCATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTgatgat                                                   <  3:354164/138‑1 (MQ=255)                                             ttGATAGCATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTgatgat                                                   >  4:354164/1‑138 (MQ=255)                                              tGATAGCATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCAc                                                                                                 <  3:25499/91‑1 (MQ=255)                                              tGATAGCATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCAc                                                                                                 >  4:25499/1‑91 (MQ=255)                                                    cATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTCTTTc                                                                                                                                       <  1:29501/47‑1 (MQ=255)                                                    cATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTCTTTc                                                                                                                                       >  2:29501/1‑47 (MQ=255)                                                      tttGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAgg                                                                   <  3:62758/113‑1 (MQ=255)                                                      tttGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAgg                                                                   >  4:62758/1‑113 (MQ=255)                                                       ttGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTa                                                                          >  3:538139/1‑105 (MQ=255)                                                       ttGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTa                                                                          <  4:538139/105‑1 (MQ=255)                                                             gCCGGATAAGGCGTTCACGCCGCATCCGGCatttaataaattacagccactctacccgcaacgacatctctgaagt                                                                                                 <  4:379063‑M1/76‑47 (MQ=255)                                                             gCCGGATAAGGCGTTCACGCCGCATCCGGCatttaataaattacagccactctacccgcaacgacatctctgaagt                                                                                                 >  3:379063‑M1/1‑30 (MQ=255)                                                              ccGGATAAGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGc                                                                                       >  4:402370/1‑85 (MQ=255)                                                              ccGGATAAGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGc                                                                                       <  3:402370/85‑1 (MQ=255)                                                                  aTAAGGCGTTCACGCCGCATCCGGCatttaataaattacagccactctacccgcaacgacatctctgaagttgttgattcccctggtgctagcgcaatgagatcacccccttccgggcgatgatg                                           >  2:89077‑M1/1‑25 (MQ=255)                                                                  aTAAGGCGTTCACGCCGCATCCGGCatttaataaattacagccactctacccgcaacgacatctctgaagttgttgattcccctggtgctagcgcaatgagatcacccccttccgggcgatgatg                                           <  1:89077‑M1/125‑101 (MQ=255)                                                                  aTAAGGCGTTCACGCCGCATCCGGCatttaataaattacagccactctacccgcaacgacatctctgaagttgttgattcccctggtgctagcgcaatg                                                                     <  1:498515‑M1/99‑75 (MQ=255)                                                                  aTAAGGCGTTCACGCCGCATCCGGCatttaataaattacagccactctacccgcaacgacatctctgaagttgttgattcccctggtgctagcgcaatg                                                                     >  2:498515‑M1/1‑25 (MQ=255)                                                                  aTAAGGCGTTCACGCCGCATCCGGCatttaataaattacagccactctacccgcaacgacatctctgaagttgttgattcccc                                                                                     <  3:1084216‑M1/83‑59 (MQ=255)                                                                  aTAAGGCGTTCACGCCGCATCCGGCatttaataaattacagccactctacccgcaacgacatctctgaagttgttgattcccc                                                                                     >  4:1084216‑M1/1‑25 (MQ=255)                                                                  aTAAGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATAtt                                                                            <  3:848075/92‑1 (MQ=255)                                                                  aTAAGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATAtt                                                                            >  4:848075/1‑92 (MQ=255)                                                                  aTAAGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCtg                                                        <  4:176072/112‑1 (MQ=255)                                                                  aTAAGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCtg                                                        >  3:176072/1‑112 (MQ=255)                                                                     aGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTc                                                                                                   >  4:1052307/1‑66 (MQ=255)                                                                     aGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTa                                                                          <  4:557640/91‑1 (MQ=255)                                                                     aGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTa                                                                          >  3:557640/1‑91 (MQ=255)                                                                     aGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGCTTGATTc                                                                                                   <  3:1052307/66‑1 (MQ=255)                                                                        cGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTATGCCTGATTa                                    >  4:580043/1‑126 (MQ=255)                                                                        cGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTATGCCTGATTa                                    <  3:580043/126‑1 (MQ=255)                                                                                 cgcATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCgg                                                                                    >  1:299874/1‑69 (MQ=255)                                                                                 cgcATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCgg                                                                                    <  2:299874/69‑1 (MQ=255)                                                                                   cATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTATGCCTGATTACGACAACTATg                         <  4:121745/126‑1 (MQ=255)                                                                                   cATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTATGCCTGATTACGACAACTATg                         >  3:121745/1‑126 (MQ=255)                                                                                   cATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTATGCCTGATTACGACAACTATGTCGAACa                  >  3:1013993/1‑133 (MQ=255)                                                                                   cATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTATGCCTGATTACGACAACTATGTCGAACa                  <  4:1013993/133‑1 (MQ=255)                                                                                    aTCCGGCatttaataaattacagccactctacccgcaacgacatctctgaagttgttgattcccctggtgctagcgcaatgagatcacccccttccgggcgatgatgatcatccggcgcatggctcatcggttccagacagaagaaat  <  4:649026‑M1/148‑142 (MQ=255)                                                                                      ccGGCatttaataaattacagccactctacccgcaacgacatctctgaagttgttgattcccctggtgctagcgcaatgagatcacccccttccgggcgatgatgatcatccggcgcatggctcatcggttccag             <  4:345466‑M1/135‑131 (MQ=255)                                                                                      ccGGCatttaataaattacagccactctacccgcaacgacatctctgaagttgttgattcccctggtgctagcgcaatgagatcacccccttccgggcgatgatgatcatccggcgcatggctcatcggttccag             >  3:345466‑M1/1‑5 (MQ=255)                                                                                      ccGGCatttaataaattacagccactctacccgcaacgacatctctgaagttg                                                                                               <  3:623848‑M1/53‑49 (MQ=255)                                                                                      ccGGCatttaataaattacagccactctacccgcaacgacatctctgaagttg                                                                                               >  4:623848‑M1/1‑5 (MQ=255)                                                                                       cGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTATGCCTGATTACGACAACTATGt                        <  2:708029/123‑1 (MQ=255)                                                                                       cGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTATGCCTGATTACGACAACTATGt                        >  1:708029/1‑123 (MQ=255)                                                                                         gCatttaataaattacagccactctacccgcaacgacatctctgaagttgttgattcccctggtgctagcgcaatgagatcacccccttccgggcgatgatgat                                         >  1:285610‑M1/1‑2 (MQ=255)                                                                                         gCatttaataaattacagccactctacccgcaacgacatctctgaagttgttgattcccctggtgctagcgcaatgagatcacccccttccgggcgatgatgat                                         <  2:285610‑M1/104‑103 (MQ=255)                                                                                         gCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTATGCCTg                                        <  1:460669/105‑1 (MQ=255)                                                                                         gCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTATGCCTg                                        >  2:460669/1‑105 (MQ=255)                                                                                          |                                                                                                                                              CCCTAACCCTCTCCCCGGTGGGGCGAGGGGACTGACCGAGCGCGTTGATAGCATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACTCTTTCAGCAACATGGTTAGCGGAGGCCAAGATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTATGCCTGATTACGACAACTATGTCGAACATATGCGGGTTAACCAT  >  NC_000913/632059‑632289

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.