New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 902202	37 (0.400)	6 (0.070)	5/190	NT	14.1%	coding (49/717 nt)	artQ	arginine ABC transporter permease
	?	NC_000913	= 902224	38 (0.430)					coding (27/717 nt)	artQ	arginine ABC transporter permease

CAGAATTTCTGGCAGGCCACGCAGAATGGTTACCAGCGCTGAACCTGCCCACGCGACAGGACGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCAGCGCAGTGTTGAGTTTCTGCTGCAGCTCAG  >  NC_000913/902068‑902348                                                                                                                                       |                                                                                                                                                   caGAATTTCTGGCAGGCCACGCAGAATGGTTACCAGCGCTGAACCTGCCCACGCGACAGGACGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGcgccgccgggatg                                                                                                                                       >  1:843983‑M1/1‑135 (MQ=255)  aGAATTTCTGGCAGGCCACGCAGAATGGTTACCAGCGCTGAACCTGCCCACGCGACAGGACGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACg                                                                                                                                             >  3:1037134/1‑141 (MQ=255)  aGAATCTCTGGCAGGCCACTCAGAATGGTTACCAGCGCTGAACCTGCCCACGCGACAGGACGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACg                                                                                                                                             <  4:1037134/141‑1 (MQ=255)            gCAGGCCACGCAGAATGGTTACCAGCGCTGAACCTGCCCACGCGACAGGACGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGcgccgccgggatgaccgtcggcct                                                                                                                            <  2:843983‑M1/148‑25 (MQ=255)                  cACGCAGAATGGTTACCAGCGCTGAACCTGCCCACGCGACAGGACGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAgg                                                                                                                                                   <  3:732881/119‑1 (MQ=255)                  cACGCAGAATGGTTACCAGCGCTGAACCTGCCCACGCGACAGGACGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAgg                                                                                                                                                   >  4:732881/1‑119 (MQ=255)                  cACGCAGAATGGTTACCAGCGCTGAACCTGCCCACGCGACAGGACGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGt                                                                                                                                           <  3:72848/127‑1 (MQ=255)                  cACGCAGAATGGTTACCAGCGCTGAACCTGCCCACGCGACAGGACGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGt                                                                                                                                           >  4:72848/1‑127 (MQ=255)                                    gcgcTGAACCTGCCCACGCGACAGGACGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGctt                                                                                                                           >  1:513295‑M2/1‑122 (MQ=255)                                    gcgcTGAACCTGCCCACGCGACAGGACGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGctt                                                                                                                           <  2:513295‑M2/125‑4 (MQ=255)                                              tGCCCACGCGACAGGACGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGt                                                                                                                                           <  1:208005/99‑1 (MQ=255)                                              tGCCCACGCGACAGGACGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGt                                                                                                                                           >  2:208005/1‑99 (MQ=255)                                                 ccACGCGACAGGACGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAattc                                                                                                          <  4:358644/129‑1 (MQ=255)                                                 ccACGCGACAGGACGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAattc                                                                                                          >  3:358644/1‑129 (MQ=255)                                                             aCGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAgg                                                                                                                   >  4:138792/1‑108 (MQ=255)                                                             aCGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAgg                                                                                                                   <  3:138792/108‑1 (MQ=255)                                                              cGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATtcattcat                                                                                                    <  2:16855/122‑1 (MQ=255)                                                              cGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATtcattcat                                                                                                    >  1:16855/1‑122 (MQ=255)                                                                ccATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGaa                                                                                  >  4:922491/1‑138 (MQ=255)                                                                ccATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGaa                                                                                  <  3:922491/138‑1 (MQ=255)                                                                   ttttGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAgg                                                                                                                                                   >  1:491406/1‑70 (MQ=255)                                                                   ttttGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCACGACAATCAATGCACAAACGGCAAgg                                                                                                                                                   <  2:491406/70‑1 (MQ=255)                                                                    tttGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATtcatc                                                                                                   >  2:446291/1‑117 (MQ=255)                                                                    tttGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATtcatc                                                                                                   <  1:446291/117‑1 (MQ=255)                                                                        ccGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATttgt                                                                          >  2:1023430/1‑138 (MQ=255)                                                                        ccGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATttgt                                                                          <  1:1023430/138‑1 (MQ=255)                                                                                        aaaGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCa                                                                               >  2:752968/1‑117 (MQ=255)                                                                                        aaaGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCa                                                                               <  1:752968/117‑1 (MQ=255)                                                                                          aGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAgg                                                                                                                                                   <  2:147641/47‑1 (MQ=255)                                                                                          aGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAgg                                                                                                                                                   >  1:147641/1‑47 (MQ=255)                                                                                             aCATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGa                                                                    >  2:363284/1‑123 (MQ=255)                                                                                             aCATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGa                                                                    <  1:363284/123‑1 (MQ=255)                                                                                                tcgccatcgccaGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTaa                                                                                                                      >  4:488731/1‑70 (MQ=255)                                                                                                tCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTaa                                                                                                                      <  3:488731/70‑1 (MQ=255)                                                                                                      gcgccagcCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTgg                                                                                    >  2:777838/1‑98 (MQ=255)                                                                                                      gcgccagcCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTgg                                                                                    <  1:777838/98‑1 (MQ=255)                                                                                                                 aCAATCAATGCACAAACGGCAAGcgccgccgggatgaccgtcggcct                                                                                                                            <  3:948489‑M1/47‑25 (MQ=255)                                                                                                                 aCAATCAATGCACAAACGGCAAGcgccgccgggatgaccgtcggcct                                                                                                                            >  4:948489‑M1/1‑23 (MQ=255)                                                                                                                    atcaatGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCAtc                                                 <  1:228457/119‑1 (MQ=255)                                                                                                                    atcaatGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCAtc                                                 >  2:228457/1‑119 (MQ=255)                                                                                                                        atGCACAAACGGCAAGcgccgccgggatgaccgtcggc                                                                                                                              <  4:692339‑M1/38‑23 (MQ=255)                                                                                                                        atGCACAAACGGCAAGcgccgccgggatgaccgtcggc                                                                                                                              >  3:692339‑M1/1‑16 (MQ=255)                                                                                                                        atGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATttgttg                                                                        >  1:733298/1‑92 (MQ=255)                                                                                                                        atGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATttgttg                                                                        <  2:733298/92‑1 (MQ=255)                                                                                                                             caAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATttgtt                                                                         <  3:707390/86‑1 (MQ=255)                                                                                                                             caAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATttgtt                                                                         >  4:707390/1‑86 (MQ=255)                                                                                                                             caAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCAGCGCAGTGTTGAGTTTctgct           >  2:817231/1‑148 (MQ=255)                                                                                                                              aaaCGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCAGCGCAGTGTTg                     <  2:910120/137‑1 (MQ=255)                                                                                                                              aaaCGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCAGCGCAGTGTTg                     >  1:910120/1‑137 (MQ=255)                                                                                                                               aaCGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCAtct                                                <  4:280299/109‑1 (MQ=255)                                                                                                                               aaCGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCAtct                                                >  3:280299/1‑109 (MQ=255)                                                                                                                                     aaGcgccgccgggatgaccgtcggccttgccgtttgtgcattgattgtcgggctggcgctggcgatgttctttgcggtatgggagtcggcaaaatggcgtcctgtcgcgtgggcaggttcagcgc                          <  2:513295‑M1/125‑123 (MQ=255)                                                                                                                                     aaGcgccgccgggatgaccgtcggccttgccgtttgtgcattgattgtcgggctggcgctggcgatgttctttgcggtatgggagtcggcaaaatggcgtcctgtcgcgtgggcaggttcagcgc                          >  1:513295‑M1/1‑3 (MQ=255)                                                                                                                                      aGGCCGACGGTCATCCCGGCGGCGcttgccgtttgtgcattgattgtcgggctggcgctggcgatgttctttgcggtatgggagtcggcaaaatggcgtcctgtcgcgtgggcaggttcagcgctggtaaccattctgcgtggcctgc  <  2:843983‑M2/148‑125 (MQ=255)                                                                                                                                      aGGCCGACGGTCATCCCGGCGGCGcttgccgtttgtgcattgattgt                                                                                                       <  3:948489‑M2/47‑24 (MQ=255)                                                                                                                                      aGGCCGACGGTCATCCCGGCGGCGcttgccgtttgtgcattgattgt                                                                                                       >  4:948489‑M2/1‑24 (MQ=255)                                                                                                                                       |                                                                                                                                                   CAGAATTTCTGGCAGGCCACGCAGAATGGTTACCAGCGCTGAACCTGCCCACGCGACAGGACGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCAGCGCAGTGTTGAGTTTCTGCTGCAGCTCAG  >  NC_000913/902068‑902348

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.