New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 902202	37 (0.400)	6 (0.070)	5/190	NT	14.1%	coding (49/717 nt)	artQ	arginine ABC transporter permease
	?	NC_000913	= 902224	38 (0.430)					coding (27/717 nt)	artQ	arginine ABC transporter permease

GCGCTGAACCTGCCCACGCGACAGGACGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCAGCGCAGTGTTGAGTTTCTGCTGCAGCTCAGTGTTGCCCTGACGT  >  NC_000913/902103‑902362                                                                                                                          |                                                                                                                                           gcgcTGAACCTGCCCACGCGACAGGACGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGctt                                                                                                                                         >  1:513295‑M2/1‑122 (MQ=255) gcgcTGAACCTGCCCACGCGACAGGACGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGctt                                                                                                                                         <  2:513295‑M2/125‑4 (MQ=255)              ccACGCGACAGGACGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAattc                                                                                                                        <  4:358644/129‑1 (MQ=255)              ccACGCGACAGGACGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAattc                                                                                                                        >  3:358644/1‑129 (MQ=255)                          aCGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAgg                                                                                                                                 >  4:138792/1‑108 (MQ=255)                          aCGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAgg                                                                                                                                 <  3:138792/108‑1 (MQ=255)                           cGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATtcattcat                                                                                                                  >  1:16855/1‑122 (MQ=255)                           cGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATtcattcat                                                                                                                  <  2:16855/122‑1 (MQ=255)                             ccATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGaa                                                                                                <  3:922491/138‑1 (MQ=255)                             ccATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGaa                                                                                                >  4:922491/1‑138 (MQ=255)                                 tttGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATtcatc                                                                                                                 <  1:446291/117‑1 (MQ=255)                                 tttGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATtcatc                                                                                                                 >  2:446291/1‑117 (MQ=255)                                     ccGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATttgt                                                                                        <  1:1023430/138‑1 (MQ=255)                                     ccGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATttgt                                                                                        >  2:1023430/1‑138 (MQ=255)                                                     aaaGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCa                                                                                             <  1:752968/117‑1 (MQ=255)                                                     aaaGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCa                                                                                             >  2:752968/1‑117 (MQ=255)                                                          aCATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGa                                                                                  >  2:363284/1‑123 (MQ=255)                                                          aCATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGa                                                                                  <  1:363284/123‑1 (MQ=255)                                                             tcgccatcgccaGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTaa                                                                                                                                    >  4:488731/1‑70 (MQ=255)                                                             tCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTaa                                                                                                                                    <  3:488731/70‑1 (MQ=255)                                                                   gcgccagcCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTgg                                                                                                  <  1:777838/98‑1 (MQ=255)                                                                   gcgccagcCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTgg                                                                                                  >  2:777838/1‑98 (MQ=255)                                                                                 atcaatGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCAtc                                                               >  2:228457/1‑119 (MQ=255)                                                                                 atcaatGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCAtc                                                               <  1:228457/119‑1 (MQ=255)                                                                                     atGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATttgttg                                                                                      <  2:733298/92‑1 (MQ=255)                                                                                     atGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATttgttg                                                                                      >  1:733298/1‑92 (MQ=255)                                                                                          caAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATttgtt                                                                                       >  4:707390/1‑86 (MQ=255)                                                                                          caAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATttgtt                                                                                       <  3:707390/86‑1 (MQ=255)                                                                                          caAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCAGCGCAGTGTTGAGTTTctgct                         >  2:817231/1‑148 (MQ=255)                                                                                           aaaCGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCAGCGCAGTGTTg                                   >  1:910120/1‑137 (MQ=255)                                                                                           aaaCGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCAGCGCAGTGTTg                                   <  2:910120/137‑1 (MQ=255)                                                                                            aaCGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCAtct                                                              >  3:280299/1‑109 (MQ=255)                                                                                            aaCGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCAtct                                                              <  4:280299/109‑1 (MQ=255)                                                                                                   aGGCCGACGGTCATCCCGGCGGCGcttgccgtttgtgcattgattgtcgggctggcgctggcgatgttctttgcggtatgggagtcggcaaaatggcgtcctgtcgcgtgggcaggttcagcgctggtaaccattctgcgtggcctgc                <  2:843983‑M2/148‑125 (MQ=255)                                                                                                   aGGCCGACGGTCATCCCGGCGGCGcttgccgtttgtgcattgattgt                                                                                                                     >  4:948489‑M2/1‑24 (MQ=255)                                                                                                   aGGCCGACGGTCATCCCGGCGGCGcttgccgtttgtgcattgattgt                                                                                                                     <  3:948489‑M2/47‑24 (MQ=255)                                                                                                     gCCGACGGTCATCCCGGCGGCGcttgccgtttgtgcat                                                                                                                            >  3:692339‑M2/1‑22 (MQ=255)                                                                                                     gCCGACGGTCATCCCGGCGGCGcttgccgtttgtgcat                                                                                                                            <  4:692339‑M2/38‑17 (MQ=255)                                                                                                            gTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAg                                                                      >  3:816119/1‑85 (MQ=255)                                                                                                            gTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAg                                                                      <  4:816119/85‑1 (MQ=255)                                                                                                             tCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCAGCGCAGTGTTGAGTTTCTGCTGCAGCTCAGTGTTGCCCTg      <  1:817231/148‑1 (MQ=255)                                                                                                              cATCCCGGCGGCGcttgccgtttgtgcattgattgtcgggctggcgctggcgatgttctttgcggtatgggagtcggcaaaatggcgtcctgtcgcgtgggcaggttcagcgctggtaaccattctgcgtggcctgccagaaattctg     >  1:843983‑M2/1‑13 (MQ=255)                                                                                                              atgaccGTCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCAGCGCAGTGTTGAGTTTc                             <  4:847508/120‑1 (MQ=255)                                                                                                                 cccGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAg                                                                      >  4:178234/1‑80 (MQ=255)                                                                                                                 cccGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAg                                                                      <  3:178234/80‑1 (MQ=255)                                                                                                                 cccGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCAGCGCAGTGTTGAGTTTCTGCTGCAGCTCAGTGTTGCCCTGACGt  >  3:854374/1‑148 (MQ=255)                                                                                                                   cggcggCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATttgttg                                                                                      >  4:1034353/1‑62 (MQ=255)                                                                                                                   cggcggCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATttgttg                                                                                      <  3:1034353/62‑1 (MQ=255)                                                                                                                          |                                                                                                                                           GCGCTGAACCTGCCCACGCGACAGGACGCCATTTTGCCGACTCCCATACCGCAAAGAACATCGCCAGCGCCAGCCCGACAATCAATGCACAAACGGCAAGGCCGACGGTCATCCCGGCGGCGCTTGCTAAAGGAAAAAATTCATTCATCAGGAATTACTTCTGGAACCATTTGTTGTAGATGGTTTCGTAAGTGCCATCTTTCTTCACTTTTTCCAGCGCAGTGTTGAGTTTCTGCTGCAGCTCAGTGTTGCCCTGACGT  >  NC_000913/902103‑902362

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.