New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2729443 =	3 (0.030)	12 (0.140)	8/180	NT	75.7%	noncoding (2/76 nt)	gltW	tRNA‑Glu
	?	NC_000913	= 4168331	5 (0.060)					intergenic (+131/‑41)	rrsB/gltT	16S ribosomal RNA of rrnB operon/tRNA‑Glu

ATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTA  >  NC_000913/2729297‑2729561                                                                                                                                                   |                                                                                                                       tggatcacctccttaccttaaagaagcgtactttgtagtgctcacacagattgtctgatagaaagtgaaaagcaaggcgtttacgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctac                                                                                                                       >  4:303648‑M1/147‑148 (MQ=255)           ccttaccttaaagaagcgtactttgtagtgctcacacagattgtctgatagaaagtgaaaagcaaggcgtttacgcgttgagagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctACACGa                                                                                                                   >  4:809772‑M1/137‑142 (MQ=255)           ccttaccttaaagaagcgtactttgtagtgctcacacagattgtctgatagaaagtgaaaagcaaggcgtttacgcgttgagagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctACACGa                                                                                                                   <  3:809772‑M1/6‑1 (MQ=255)                                gagaTATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAAt                                                                                                               <  4:1043934/125‑1 (MQ=32)                                gagaTATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAAt                                                                                                               >  3:1043934/1‑125 (MQ=33)                                 ttgtagtgctcacacagattgtctgatagaaagtgaaaagcaaggcgtttacgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctACACGAAAAt                                                                                                               <  4:552797‑M1/10‑1 (MQ=255)                                 ttgtagtgctcacacagattgtctgatagaaagtgaaaagcaaggcgtttacgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctACACGAAAAt                                                                                                               >  3:552797‑M1/115‑124 (MQ=255)                                               cagattgtctgatagaaagtgaaaagcaaggcgtttacgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCgtg                                                                                <  4:485624‑M1/41‑1 (MQ=255)                                               cagattgtctgatagaaagtgaaaagcaaggcgtttacgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCgtg                                                                                >  3:485624‑M1/101‑141 (MQ=255)                                                                      tagcaaggcgtttacgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctACACGAAAATTGCTTGTCACGCGTTGCGTGATATTTTCg                                                                                  >  1:956469‑M1/78‑116 (MQ=255)                                                                      tagcaaggcgtttacgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCg                                                                                  <  2:956469‑M1/39‑1 (MQ=255)                                                                       agcaaggcgtttacgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcacccgACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAg                                                                             >  2:664161‑M1/77‑120 (MQ=255)                                                                       agcaaggcgtttacgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcacccgACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAg                                                                             <  1:664161‑M1/44‑1 (MQ=255)                                                                         caaggcgtttacgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctaca                                                                                                                      >  2:256921‑M1/75‑77 (MQ=255)                                                                         caaggcgtttacgcgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctaca                                                                                                                      <  1:256921‑M1/3‑1 (MQ=255)                                                                                      cgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctACACGAAAATTGCTTATCACGCGt                                                                                                 >  1:128256‑M1/62‑85 (MQ=255)                                                                                      cgttgggagtgaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctACACGAAAATTGCTTATCACGCGt                                                                                                 <  2:128256‑M1/24‑1 (MQ=255)                                                                                                gaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctACACGaa                                                                                                                  <  2:275392‑M1/7‑1 (MQ=255)                                                                                                gaggctgaagagaataaggccgttcgctttctattaatgaaagctcaccctACACGaa                                                                                                                  >  1:275392‑M1/52‑58 (MQ=255)                                                                                                    ctgaagagaataaggccgttcgctttctattaatgaaagctcaccctACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCgtgt                                                                               <  4:566114‑M1/42‑1 (MQ=255)                                                                                                    ctgaagagaataaggccgttcgctttctattaatgaaagctcaccctACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCgtgt                                                                               >  3:279726‑M1/48‑89 (MQ=255)                                                                                                    ctgaagagaataaggccgttcgctttctattaatgaaagctcaccctACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCgtgt                                                                               <  4:279726‑M1/42‑1 (MQ=255)                                                                                                    ctgaagagaataaggccgttcgctttctattaatgaaagctcaccctACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCgtgt                                                                               >  3:566114‑M1/48‑89 (MQ=255)                                                                                                                      gCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTa  >  1:243850/1‑148 (MQ=11)                                                                                                                                                   |                                                                                                                       ATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTA  >  NC_000913/2729297‑2729561

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.