New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2729443 =	3 (0.030)	12 (0.140)	8/180	NT	75.7%	noncoding (2/76 nt)	gltW	tRNA‑Glu
	?	NC_000913	= 4168331	5 (0.060)					intergenic (+131/‑41)	rrsB/gltT	16S ribosomal RNA of rrnB operon/tRNA‑Glu

TGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCC  >  NC_000913/4168186‑4168375                                                                                                                                                  |                                             tGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTac                                            >  4:303648‑M2/1‑146 (MQ=255)          tcctTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAata                                   >  3:1060046/1‑148 (MQ=255)           ccttaccttaAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGAGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTacacga                                        >  4:809772‑M2/1‑136 (MQ=255)           ccttaccttaAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGAGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTacacga                                        <  3:809772‑M2/142‑7 (MQ=255)                           cGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATa                  <  4:1060046/148‑1 (MQ=255)                                 ttGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTacacgaaaat                                    <  4:552797‑M2/124‑11 (MQ=255)                                 ttGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTacacgaaaat                                    >  3:552797‑M2/1‑114 (MQ=255)                                               caGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTacacgaaaattgcttatcacgcgttgcgtgatattttcgtg     <  4:485624‑M2/141‑42 (MQ=255)                                               caGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTacacgaaaattgcttatcacgcgttgcgtgatattttcgtg     >  3:485624‑M2/1‑100 (MQ=255)                                                                    aaaaGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTg                     >  4:1040474/1‑104 (MQ=32)                                                                    aaaaGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTg                     <  3:1040474/104‑1 (MQ=32)                                                                     aaaGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAAcg                         >  2:30986/1‑99 (MQ=32)                                                                     aaaGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAAcg                         <  1:30986/99‑1 (MQ=32)                                                                      tagCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTacacgaaaattgcttgtcacgcgttgcgtgatattttcg       >  1:956469‑M2/2‑77 (MQ=255)                                                                      tagCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTacacgaaaattgcttatcacgcgttgcgtgatattttcg       <  2:956469‑M2/115‑40 (MQ=255)                                                                       aGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCGacacgaaaattgcttatcacgcgttgcgtgatattttcgtgtag  >  2:664161‑M2/1‑76 (MQ=255)                                                                       aGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCGacacgaaaattgcttatcacgcgttgcgtgatattttcgtgtag  <  1:664161‑M2/120‑45 (MQ=255)                                                                         cAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTaca                                           >  2:256921‑M2/1‑74 (MQ=255)                                                                         cAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTaca                                           <  1:256921‑M2/77‑4 (MQ=255)                                                                                      cgTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTacacgaaaattgcttatcacgcgt                      <  2:128256‑M2/85‑25 (MQ=255)                                                                                      cgTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTacacgaaaattgcttatcacgcgt                      >  1:128256‑M2/1‑61 (MQ=255)                                                                                                gAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTacacgaa                                       >  1:275392‑M2/1‑51 (MQ=255)                                                                                                gAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTacacgaa                                       <  2:275392‑M2/58‑8 (MQ=255)                                                                                                    cTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTacacgaaaattgcttatcacgcgttgcgtgatattttcgtgt    >  3:279726‑M2/1‑47 (MQ=255)                                                                                                    cTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTacacgaaaattgcttatcacgcgttgcgtgatattttcgtgt    >  3:566114‑M2/1‑47 (MQ=255)                                                                                                    cTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTacacgaaaattgcttatcacgcgttgcgtgatattttcgtgt    <  4:279726‑M2/89‑43 (MQ=255)                                                                                                    cTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTacacgaaaattgcttatcacgcgttgcgtgatattttcgtgt    <  4:566114‑M2/89‑43 (MQ=255)                                                                                                                                                  |                                             TGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCC  >  NC_000913/4168186‑4168375

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.