New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4171761	14 (0.150)	8 (0.090) +TAG	8/194	NT	39.8%	intergenic (+5/‑296)	rrfB/murB	5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding
	?	NC_000913	= 4213198	11 (0.120)					intergenic (+39/‑36)	rrfE/yjaA	5S ribosomal RNA of rrnE operon/stress‑induced protein

CAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGG  >  NC_000913/4171630‑4171817                                                                                                                                    |                                                         cAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAg                                          >  4:819239/1‑148 (MQ=32)             ggcggcAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTgg                              >  4:943499/1‑148 (MQ=35)              gcggcAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTggg                             <  3:943499/148‑1 (MQ=35)                             tggtCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATtagaaa                                                    >  4:378794‑M1/1‑104 (MQ=255)                             tggtCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATtagaaa                                                    <  3:378794‑M1/110‑7 (MQ=255)                                 cccACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATtagaaaaaccccggccttatggaccgg                               <  2:572588‑M1/127‑28 (MQ=255)                                 cccACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATta                                                        <  1:1011148‑M1/102‑3 (MQ=255)                                 cccACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATta                                                        >  2:1011148‑M1/1‑100 (MQ=255)                                 cccACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGGGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATtagaaaaaccccggccttatggaccgg                               >  1:572588‑M1/1‑100 (MQ=255)                                   cACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCGGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTg                               <  2:10091/125‑1 (MQ=25)                                   cACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTg                               >  1:10091/1‑125 (MQ=35)                                         aCCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCgg  <  3:819239/148‑1 (MQ=35)                                             cATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTgg                              <  2:127866/116‑1 (MQ=35)                                             cATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTgg                              >  1:127866/1‑116 (MQ=38)                                              aTGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATta                                                        >  4:844961‑M1/1‑87 (MQ=255)                                              aTGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATta                                                        <  3:844961‑M1/89‑3 (MQ=255)                                                               gAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGaa                                                  <  3:597480/78‑1 (MQ=35)                                                               gAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGaa                                                  >  4:597480/1‑78 (MQ=35)                                                                                aTGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATtagaaaaaccccggccttatggaccg                                >  4:1081434‑M1/1‑53 (MQ=255)                                                                                aTGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATtagaaaaaccccggccttatggaccg                                <  3:1081434‑M1/79‑27 (MQ=255)                                                                                           gggTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATtagaaaaaccccggccttatggaccgggg                             >  3:803422‑M1/1‑42 (MQ=255)                                                                                           gggTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATtagaaaaaccccggccttatggaccgggg                             <  4:803422‑M1/71‑30 (MQ=255)                                                                                                   ccATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGaa                                     >  1:377607/1‑55 (MQ=35)                                                                                                   ccATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGaa                                     <  2:377607/55‑1 (MQ=35)                                                                                                     aTGCGAGAGTAGGGAACTGCCAGGCATCAAATtaga                                                      <  4:74584‑M1/36‑5 (MQ=255)                                                                                                     aTGCGAGAGTAGGGAACTGCCAGGCATCAAATtaga                                                      >  3:74584‑M1/1‑32 (MQ=255)                                                                                                                 ggAACTGCCAGGCATCAAATtagaaaaaccccggccttatggacc                                 >  2:342388‑M1/1‑20 (MQ=255)                                                                                                                 ggAACTGCCAGGCATCAAATtagaaaaaccccggccttatggacc                                 <  1:342388‑M1/45‑26 (MQ=255)                                                                                                                  gAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGa                                  <  4:610259/43‑1 (MQ=40)                                                                                                                  gAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGa                                  >  3:610259/1‑43 (MQ=38)                                                                                                                                    |                                                         CAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGG  >  NC_000913/4171630‑4171817

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.