New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4171761	14 (0.150)	8 (0.090) +TAG	8/194	NT	39.8%	intergenic (+5/‑296)	rrfB/murB	5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding
	?	NC_000913	= 4213198	11 (0.120)					intergenic (+39/‑36)	rrfE/yjaA	5S ribosomal RNA of rrnE operon/stress‑induced protein

CTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGGAGACGCTGCCTTCAGTAACCAGCGCCTGTTAAT  >  NC_000913/4213127‑4213343                                                                        |                                                                                                                                                  ctcCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGc                                                                                                                                                <  4:80187/75‑1 (MQ=255) ctcCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGc                                                                                                                                                >  3:80187/1‑75 (MQ=255)                                     aTTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCatg                                                                                                                              <  4:31432/57‑1 (MQ=255)                                     aTTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCatg                                                                                                                              >  3:31432/1‑57 (MQ=255)                                               ccccGGTCCATAAGGCCGGGGTTTTTctaatttgatgcctggcagttccctactctcgcatggggagaccc                                                                                                      <  4:803422‑M2/71‑46 (MQ=255)                                               ccccGGTCCATAAGGCCGGGGTTTTTctaatttgatgcctggcagttccctactctcgcatggggagaccc                                                                                                      >  3:803422‑M2/1‑26 (MQ=255)                                                 ccGGTCCATAAGGCCGGGGTTTTTctaatttgatgcctggcagttccctactctcgcatggggagaccccaccctaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtggg                                            >  1:572588‑M2/1‑24 (MQ=255)                                                 ccGGTCCATAAGGCCGGGGTTTTTctaatttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtggg                                            <  2:572588‑M2/127‑104 (MQ=255)                                                  cGGTCCATAAGGCCGGGGTTTTTctaatttgatgcctggcagttccctactctcgcatggggagaccccacactaccat                                                                                           >  4:1081434‑M2/1‑23 (MQ=255)                                                  cGGTCCATAAGGCCGGGGTTTTTctaatttgatgcctggcagttccctactctcgcatggggagaccccacactaccat                                                                                           <  3:1081434‑M2/79‑57 (MQ=255)                                                   ggTCCATAAGGCCGGGGTTTTTctaatttgatgcctggcagttcc                                                                                                                            <  1:342388‑M2/45‑24 (MQ=255)                                                   ggTCCATAAGGCCGGGGTTTTTctaatttgatgcctggcagttcc                                                                                                                            >  2:342388‑M2/1‑22 (MQ=255)                                                     tCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGaa                                                                                                                         <  3:506209/46‑1 (MQ=255)                                                     tCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGaa                                                                                                                         >  4:506209/1‑46 (MQ=255)                                                        aTAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGGAGACGCTGCCTTCAGTAAc                >  1:977078/1‑148 (MQ=255)                                                         tAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGGAGACGCTGCCTTCAGTa                  >  3:483408/1‑145 (MQ=255)                                                         tAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGGAGACGCTGCCTTCAGTa                  <  4:483408/145‑1 (MQ=255)                                                                ggggTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGGAGACGCTGCCTTCAGTAACCAGCGCCt        >  1:199041/1‑148 (MQ=255)                                                                 gggTTTTTTGCATATCAATTATTTGCATAATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATc                                                            >  3:681554/1‑95 (MQ=255)                                                                 ggcttttttGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATc                                                            <  4:681554/92‑1 (MQ=255)                                                                  ggTTTTTTGCATATCAATTATTTGCATGATGAAGGGACTCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGGAGACGCTGCCt                        <  3:27426/130‑1 (MQ=255)                                                                  ggTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGGAGACGCTGCCt                        >  4:27426/1‑130 (MQ=255)                                                                     tttttGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATc                                                            <  2:833246/91‑1 (MQ=255)                                                                     tttttGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATc                                                            >  1:833246/1‑91 (MQ=255)                                                                      ttttGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGGAGACGCTGCCTTCAGTAACCAGCGCCTGTTAAt  <  2:199041/148‑1 (MQ=255)                                                                      tttctaatttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtgggacca                                        >  4:378794‑M2/1‑3 (MQ=255)                                                                      tttctaatttgatgcctggcagttccctactctcgcatggggagaccccacactaccatcggcgctacggcgtttcacttctgagttcggcatggggtcaggtgggacca                                        <  3:378794‑M2/110‑108 (MQ=255)                                                                        tctaatttgatgcctggcagttccctactctcgcat                                                                                                                >  3:74584‑M2/1‑1 (MQ=255)                                                                        tctaatttgatgcctggcagttccctactctcgcat                                                                                                                <  4:74584‑M2/36‑36 (MQ=255)                                                                        |                                                                                                                                                  CTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGGAGACGCTGCCTTCAGTAACCAGCGCCTGTTAAT  >  NC_000913/4213127‑4213343

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.