BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4546905 =	126 (1.350)	6 (0.070)	6/186	NT	4.3%	coding (1810/2637 nt)	fimD	fimbrial usher outer membrane porin protein; FimCD chaperone‑usher
*	?	NC_000913	4546951 =	150 (1.730)	6 (0.070)	6/186	NT	4.3%	coding (1856/2637 nt)	fimD	fimbrial usher outer membrane porin protein; FimCD chaperone‑usher
Rejected: Frequency below/above cutoff threshold.

Only 100 of 153 total aligned reads displayed.

AGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATACTGCGTTCGAAGATATCAACTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAGCG  >  NC_000913/4546761‑4547046

ctgtacttccgctatttccatcgcctcccccggcatagccggtttgcacgctatagctgaggttgttgtcttccagcaacgtaccgtatacaccagccagattggtcatccgaccgttgagatcgtgtgacatgctgtagctggCACt                                                                                                                                            <  1:412957‑M1/4‑1 (MQ=255)

 tgtacttccgctatttccatcgcctcccccggcatagccggtttgcacgctatagctgaggttgttgtcttccagcaacgtaccgtatacaccagccagattggtcatccgaccgttgagatcgtgtgacatgctgtagctggCACTg                                                                                                                                           <  3:955280‑M1/5‑1 (MQ=255)

     tGTCGATGAGCAATTCCAGGCTGGATTAAATACTGCGTTCGAAGATATCAACTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACt                                                                                                                                            <  2:672652/143‑1 (MQ=255)

     tGTCGATGAGCAATTCCAGGCTGGATTAAATACTGCGTTCGAAGATATCAACTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACt                                                                                                                                            >  1:672652/1‑143 (MQ=255)

                   tCCAGGCTGGATTAAATACTGCGTTCGAAGATATCAACTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTc                                                                                                                                  <  3:1056499/139‑1 (MQ=255)

                   tCCAGGCTGGATTAAATACTGCGTTCGAAGATATCAACTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTc                                                                                                                                  >  4:1056499/1‑139 (MQ=255)

                                 catagccggtttgcacgctatagctgaggttgttgtcttccagcaacgtaccgtatacaccagccagattggtcatccgaccgttgagatcgtgtgacatgctgtagctggCAc                                                                                                                                             >  3:61481‑M1/112‑114 (MQ=255)

                                 catagccggtttgcacgctatagctgaggttgttgtcttccagcaacgtaccgtatacaccagccagattggtcatccgaccgttgagatcgtgtgacatgctgtagctggCAc                                                                                                                                             <  4:61481‑M1/3‑1 (MQ=255)

                                           tCGAAGATATCAACTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTgg                                                                                                               >  4:725426/1‑134 (MQ=255)

                                           tCGAAGATATCAACTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTgg                                                                                                               <  3:725426/134‑1 (MQ=255)

                                           tCGAAGATATCAACTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACAtgccagtgc                                                                                                 <  1:477671/148‑1 (MQ=255)

                                            cGAAGATATCAACTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCt                                                                                                                                        >  2:341988/1‑108 (MQ=255)

                                            cGAAGATATCAACTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCt                                                                                                                                        <  1:341988/108‑1 (MQ=255)

                                              aaGATATCAACTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGAc                                                                                                                              <  2:581575/116‑1 (MQ=255)

                                              aaGATATCAACTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGAc                                                                                                                              >  1:581575/1‑116 (MQ=255)

                                                     cAACTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAg                                                                                                                  >  1:435732/1‑121 (MQ=255)

                                                     cAACTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAg                                                                                                                  <  2:435732/121‑1 (MQ=255)

                                                      aaCTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCa                                                                                      <  2:416121/148‑1 (MQ=255)

                                                       aCTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAAtctc                                                                                                                    <  1:432479/117‑1 (MQ=255)

                                                        cTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTc                                                                                                                                  <  3:177588/102‑1 (MQ=255)

                                                        cTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTc                                                                                                                                  >  4:177588/1‑102 (MQ=255)

                                                          gaggttgttgtcttccagcaacgtaccgtatacaccagccagattggtcatccgaccgttgagatcgtgtgacatgctgtagctggCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACAtgcca                                                                                                     >  3:319846‑M1/87‑129 (MQ=255)

                                                          gaggttgttgtcttccagcaacgtaccgtatacaccagccagattggtcatccgaccgttgagatcgtgtgacatgctgtagctggCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACAtgcca                                                                                                     <  4:319846‑M1/43‑1 (MQ=255)

                                                               tgttgtcttccagcaacgtaccgtatacaccagccagattggtcatccgaccgttgagatcgtgtgacatgctgtagctggCACTg                                                                                                                                           >  1:1108184‑M1/82‑86 (MQ=255)

                                                               tgttgtcttccagcaacgtaccgtatacaccagccagattggtcatccgaccgttgagatcgtgtgacatgctgtagctggCACTg                                                                                                                                           <  2:1108184‑M1/5‑1 (MQ=255)

                                                                 cAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACAtg                                                                                                        <  1:404434/119‑1 (MQ=255)

                                                                 cAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACAtg                                                                                                        >  2:404434/1‑119 (MQ=255)

                                                                       tccagcaacgtaccgtatacaccagccagattggtcatccgaccgttgagatcgtgtgacatgctgtagctggCACt                                                                                                                                            <  3:693852‑M1/4‑1 (MQ=255)

                                                                       tccagcaacgtaccgtatacaccagccagattggtcatccgaccgttgagatcgtgtgacatgctgtagctggCACt                                                                                                                                            >  4:693852‑M1/74‑77 (MQ=255)

                                                                          ccTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTc                                                                                                                                  >  3:554496/1‑84 (MQ=255)

                                                                          ccTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTc                                                                                                                                  <  4:554496/84‑1 (MQ=255)

                                                                           cTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTg                                                                                                                                       <  2:871651/78‑1 (MQ=255)

                                                                            tGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTg                                                                                                                                <  3:678717/84‑1 (MQ=255)

                                                                            tGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTg                                                                                                                                >  4:678717/1‑84 (MQ=255)

                                                                                 aaaaaCGCCTGGCAAAAAGGACGGGATCAGATGTTAGGGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCaa                                                                      <  2:353870/137‑1 (MQ=255)

                                                                                 aaaaaCGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGtt                                                                                                                                   >  3:524497/1‑76 (MQ=255)

                                                                                 aaaaaCGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGtt                                                                                                                                   >  1:1123317/1‑76 (MQ=255)

                                                                                 aaaaaCGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGtt                                                                                                                                   <  4:524497/76‑1 (MQ=255)

                                                                                 aaaaaCGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAg                                                                                                                  <  1:758802/93‑1 (MQ=255)

                                                                                 aaaaaCGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCaa                                                                      >  1:353870/1‑137 (MQ=255)

                                                                                  aaaaCGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACAtgccagtgcca                                                                                               >  4:919599/1‑111 (MQ=255)

                                                                                  aaaaCGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACAtgccagtgcca                                                                                               <  3:919599/111‑1 (MQ=255)

                                                                                     aCGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCaa                                                       <  3:363228/148‑1 (MQ=255)

                                                                                                aaaGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCa                                                                       <  4:371194/121‑1 (MQ=255)

                                                                                                aaaGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCa                                                                       >  3:371194/1‑121 (MQ=255)

                                                                                                 aaGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGt                                                                  >  2:122455/1‑125 (MQ=255)

                                                                                                 aaGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGt                                                                  <  1:122455/125‑1 (MQ=255)

                                                                                                      cGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACg                                      >  2:288508/1‑148 (MQ=255)

                                                                                                          aTCAGAGGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGTCTGGTGTATACGGTAc                                  >  3:1112632/1‑148 (MQ=255)

                                                                                                            cAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCaa                                                                      >  3:861804/1‑110 (MQ=255)

                                                                                                            cAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCaa                                                                      <  2:112001/110‑1 (MQ=255)

                                                                                                            cAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCaa                                                                      <  4:861804/110‑1 (MQ=255)

                                                                                                               aTGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGa                                                           >  2:560861/1‑118 (MQ=255)

                                                                                                               aTGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGa                                                           <  1:560861/118‑1 (MQ=255)

                                                                                                                tGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATctggct                                                >  3:580208/1‑128 (MQ=255)

                                                                                                                tGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATctggct                                                <  4:580208/128‑1 (MQ=255)

                                                                                                                tGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACg                                      <  3:870795/138‑1 (MQ=255)

                                                                                                                tGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACg                                      >  4:870795/1‑138 (MQ=255)

                                                                                                                   tAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGTTGTATACGGTACGTTGCTGGa                         >  4:264612/1‑148 (MQ=255)

                                                                                                                   tAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGa                         <  1:288508/148‑1 (MQ=255)

                                                                                                                   tAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGa                         >  2:908776/1‑148 (MQ=255)

                                                                                                                   tAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGa                         <  4:1112632/148‑1 (MQ=255)

                                                                                                                        cTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGa                                                           >  2:7601/1‑109 (MQ=255)

                                                                                                                         ttAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACAtg                                                                                                        >  3:880854/1‑63 (MQ=255)

                                                                                                                         ttAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACAtg                                                                                                        <  4:880854/63‑1 (MQ=255)

                                                                                                                          tAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAAt                                                      >  2:813203/1‑112 (MQ=255)

                                                                                                                          tAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAAt                                                      <  1:813203/112‑1 (MQ=255)

                                                                                                                             cGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGaca                    >  2:647584/1‑143 (MQ=255)

                                                                                                                             cGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGaca                    <  1:165248/143‑1 (MQ=255)

                                                                                                                             cGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGaca                    <  1:647584/143‑1 (MQ=255)

                                                                                                                             cGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGaca                    >  2:165248/1‑143 (MQ=255)

                                                                                                                               tCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGt                                                                  >  2:1037123/1‑95 (MQ=255)

                                                                                                                               tCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATctggc                                                 <  1:1104656/112‑1 (MQ=255)

                                                                                                                               tCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATctggc                                                 >  2:1104656/1‑112 (MQ=255)

                                                                                                                               tCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCt                            >  3:1097320/1‑133 (MQ=255)

                                                                                                                               tCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCt                            <  4:1097320/133‑1 (MQ=255)

                                                                                                                               tCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCt             >  4:645619/1‑148 (MQ=255)

                                                                                                                                cAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTc            <  1:908776/148‑1 (MQ=255)

                                                                                                                                  atatTCCTTTCAGCCACTGGCTGCGTTCTGGCAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTc            >  2:160425/1‑146 (MQ=255)

                                                                                                                                  atatTCCTTTCACCCACTGGCTGCGTTCTGGCAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTc            <  1:160425/146‑1 (MQ=255)

                                                                                                                                    tgctgtagctggCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACAtgcc                                                                                                      <  2:721584‑M1/42‑1 (MQ=255)

                                                                                                                                    tgctgtagctggCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACAtgcc                                                                                                      >  1:721584‑M1/13‑54 (MQ=255)

                                                                                                                                    atTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCa                                                                       >  4:789056/1‑85 (MQ=255)

                                                                                                                                    atTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCa                                                                       <  3:789056/85‑1 (MQ=255)

                                                                                                                                      tCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATc                                                     >  4:560694/1‑101 (MQ=255)

                                                                                                                                      tCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATc                                                     <  3:560694/101‑1 (MQ=255)

                                                                                                                                          ttCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGa                                                              <  2:469066/88‑1 (MQ=255)

                                                                                                                                          ttCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGTTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAGCg  <  3:264612/148‑1 (MQ=255)

                                                                                                                                          ttCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATCCGGTACGTTGCTGGAAGAcaacaa                >  3:689723/1‑134 (MQ=255)

                                                                                                                                          ttCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGaca                    >  1:721142/1‑130 (MQ=255)

                                                                                                                                          ttCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGaca                    <  2:721142/130‑1 (MQ=255)

                                                                                                                                          ttCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGAcaacaa                <  4:689723/134‑1 (MQ=255)

                                                                                                                                          ttCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAGCg  <  1:1002927/148‑1 (MQ=255)

                                                                                                                                              gCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGa                                                           <  2:747470/87‑1 (MQ=255)

                                                                                                                                              gCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGa                                                           >  1:747470/1‑87 (MQ=255)

                                                                                                                                              gCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAAcc              <  2:288942/132‑1 (MQ=255)

                                                                                                                                              gCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAAcc              >  1:288942/1‑132 (MQ=255)

                                                                                                                                              gCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAg    <  2:1000400/142‑1 (MQ=255)

                                                                                                                                              gCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAg    >  1:1000400/1‑142 (MQ=255)

                                                                                                                                                CACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCta       <  1:85924‑M1/137‑1 (MQ=255)

AGTAATGTCGATGAGCAATTCCAGGCTGGATTAAATACTGCGTTCGAAGATATCAACTGGACGCTCAGCTATAGCCTGACGAAAAACGCCTGGCAAAAAGGACGGGATCAGATGTTAGCGCTTAACGTCAATATTCCTTTCAGCCACTGGCTGCGTTCTGACAGTAAATCTCAGTGGCGACATGCCAGTGCCAGCTACAGCATGTCACACGATCTCAACGGTCGGATGACCAATCTGGCTGGTGTATACGGTACGTTGCTGGAAGACAACAACCTCAGCTATAGCG  >  NC_000913/4546761‑4547046

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.