New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4593334	NA (NA)	6 (0.070)	6/178	NT	NA	noncoding (9/26 nt)	REP349 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP349 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	= 4593342	NA (NA)					noncoding (17/26 nt)	REP349 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP349 (repetitive extragenic palindromic) element; contains 1 REP sequences

TCCGGATTCAGCAACAGCAGCGTGAAACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCCCCCGCTGCGGTGACGCAACCGCAGATGATTAGTGCCAGACGGAATGAGTGGGTGGTATC  >  NC_000913/4593200‑4593477                                                                                                                                       |                                                                                                                                                tCCGGATTCAGCAACAGCAGCGTGAAACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGttatc                                                                                                                                    <  1:73534‑M2/148‑6 (MQ=255)    ggATTCAGCAACAGCAGCGTGAAACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCaaaa                                                                                                                                           >  4:139132/1‑138 (MQ=255)    ggATTCAGCAACAGCAGCGTGAAACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCaaaa                                                                                                                                           <  3:139132/138‑1 (MQ=255)    ggATTCAGCAACAGCAGCGTGAAACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGttatcggg                                                                                                                                 <  4:828290‑M2/148‑9 (MQ=255)            cAACAGCAGCGTGAAACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGttat                                                                                                                                     >  1:395940‑M2/1‑132 (MQ=255)            cAACAGCAGCGTGAAACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGttat                                                                                                                                     <  2:395940‑M2/136‑5 (MQ=255)                                    gtgGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTg                                                                                                 >  4:282777/1‑148 (MQ=255)                                      ggTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGAt                                                                                               <  3:282777/148‑1 (MQ=255)                                          aaaaCCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGttatcg                                                                                                                                   <  2:475362‑M2/108‑7 (MQ=255)                                          aaaaCCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGttatcg                                                                                                                                   >  1:475362‑M2/1‑102 (MQ=255)                                            aaCCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTg                                                                                                         >  3:915369/1‑132 (MQ=255)                                            aaCCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTg                                                                                                         <  4:915369/132‑1 (MQ=255)                                                    cGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCa                                                                                 <  3:828290/148‑1 (MQ=255)                                                         gCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTaa                                                                                                                   <  1:514003/109‑1 (MQ=255)                                                         gCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTaa                                                                                                                   >  2:514003/1‑109 (MQ=255)                                                          cTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGa                                                                           <  2:73534/148‑1 (MQ=255)                                                                    tAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAAcc                                                                                  <  4:786018/131‑1 (MQ=255)                                                                    tAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAAcc                                                                                  >  3:786018/1‑131 (MQ=255)                                                                    tAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAAcc                                                                                  >  2:184619/1‑131 (MQ=255)                                                                    tAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAAcc                                                                                  <  1:184619/131‑1 (MQ=255)                                                                     aaaaTGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTg                                                                                                         >  3:367102/1‑107 (MQ=255)                                                                     aaaaTGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTg                                                                                                         <  4:367102/107‑1 (MQ=255)                                                                            ccGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAcattttgct                                                                                                                                        >  2:682802‑M1/1‑60 (MQ=255)                                                                            ccGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAcattttgct                                                                                                                                        <  1:682802‑M1/69‑10 (MQ=255)                                                                                 gCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGa                                                                              >  3:87372/1‑122 (MQ=255)                                                                                 gCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGa                                                                              <  4:87372/122‑1 (MQ=255)                                                                                  cAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAcattttgcttatcg                                                                                                                                   >  4:187087‑M1/1‑54 (MQ=255)                                                                                  cAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAcattttgcttatcg                                                                                                                                   <  3:187087‑M1/68‑15 (MQ=255)                                                                                           aggagAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAcattttgcttatc                                                                                                                                    >  2:136309‑M1/1‑45 (MQ=255)                                                                                           aggagAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAcattttgcttatc                                                                                                                                    <  1:136309‑M1/58‑14 (MQ=255)                                                                                                        aaCATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAAt                                                                                                                  <  4:465861/63‑1 (MQ=255)                                                                                                        aaCATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAAt                                                                                                                  >  3:465861/1‑63 (MQ=255)                                                                                                        aaCATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGAt                                                                          >  1:1009302/1‑103 (MQ=255)                                                                                                        aaCATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGAt                                                                          <  2:1009302/103‑1 (MQ=255)                                                                                                        aaCATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCCCCCGCTGCGGTGACGCAACCGCAg                                     <  4:695765/140‑1 (MQ=255)                                                                                                        aaCATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCCCCCGCTGCGGTGACGCAACCGCAg                                     >  3:695765/1‑140 (MQ=255)                                                                                                            ttttAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGa                                                                           <  2:551469/98‑1 (MQ=255)                                                                                                            ttttAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGa                                                                           >  1:551469/1‑98 (MQ=255)                                                                                                                      cATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCCCCCGCTGCGGTGACGCAACCGCAGATGATTAg                             <  3:297713/134‑1 (MQ=255)                                                                                                                      cATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCCCCCGCTGCGGTGACGCAACCGCAGATGATTAg                             >  4:297713/1‑134 (MQ=255)                                                                                                                         gAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTg                                                                                                         >  3:929277/1‑55 (MQ=255)                                                                                                                         gAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTg                                                                                                         <  4:929277/55‑1 (MQ=255)                                                                                                                                cccGATAAcattttgcttatcgggcattttcatggcgattaaaatgtttcccagttctcctcgctatctgccacggccattttacgcggcgcagctggcgtcacggtttttaccacagccgatgtttcacgctgctgttgctgaatcc     <  4:828290‑M1/148‑141 (MQ=255)                                                                                                                                cccGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCCCCCGCTGCGGTGACGCAACCGCAGATGATTAGTGCCAGACGGAATGAGTGggtggt     >  4:62321/1‑148 (MQ=255)                                                                                                                                  cGATAAcattttgcttatcgggcattttcatggcgattaaaatgtttcccagttctcctcgctatctgccacggccattttacgcggcgcagctggcgtcacggtttt                                           >  1:475362‑M1/1‑6 (MQ=255)                                                                                                                                  cGATAAcattttgcttatcgggcattttcatggcgattaaaatgtttcccagttctcctcgctatctgccacggccattttacgcggcgcagctggcgtcacggtttt                                           <  2:475362‑M1/108‑103 (MQ=255)                                                                                                                                  cGATAAGCAAAATGttatcgggcattttcatggcgattaaaatgtttcccagttctcctcgctatctg                                                                                   <  3:187087‑M2/68‑55 (MQ=255)                                                                                                                                  cGATAAGCAAAATGttatcgggcattttcatggcgattaaaatgtttcccagttctcctcgctatctg                                                                                   >  4:187087‑M2/1‑14 (MQ=255)                                                                                                                                  cGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCCCCCGCTGCGGTGACGCAACCGCAGATGATTAGTGCCAGACGGAATGAGTGGGTGGTAt   <  3:62321/148‑1 (MQ=255)                                                                                                                                   gATAAcattttgcttatcgggcattttcatggcgattaaaatgtttcccagttctcctcgctatctgccacggccattttacgcggcgcagctggcgtcacggtttttaccacagccgatgtttcacgctgctgttgctgaatccgga  <  1:73534‑M1/148‑144 (MQ=255)                                                                                                                                   gATAAGCAAAATGttatcgggcattttcatggcgattaaaatgtttcccagttctcct                                                                                            >  2:136309‑M2/1‑13 (MQ=255)                                                                                                                                   gATAAGCAAAATGttatcgggcattttcatggcgattaaaatgtttcccagttctcct                                                                                            <  1:136309‑M2/58‑46 (MQ=255)                                                                                                                                    aTAAcattttgcttatcgggcattttcatggcgattaaaatgtttcccagttctcctcgctatctgccacggccattttacgcggcgcagctggcgtcacggtttttaccacagccgatgtttcacgctgctgttg             <  2:395940‑M1/136‑133 (MQ=255)                                                                                                                                    aTAAcattttgcttatcgggcattttcatggcgattaaaatgtttcccagttctcctcgctatctgccacggccattttacgcggcgcagctggcgtcacggtttttaccacagccgatgtttcacgctgctgttg             >  1:395940‑M1/1‑4 (MQ=255)                                                                                                                                    aTAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCCCCCGCTGCGGTGACGCAACCGCAg                                     >  2:114380/1‑112 (MQ=255)                                                                                                                                    aTAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCCCCCGCTGCGGTGACGCAACCGCAg                                     <  1:114380/112‑1 (MQ=255)                                                                                                                                       aGCAAAATGttatcgggcattttcatggcgattaaaatgtttcccagttctcctcgctatctgccacgg                                                                             <  1:682802‑M2/69‑61 (MQ=255)                                                                                                                                       aGCAAAATGttatcgggcattttcatggcgattaaaatgtttcccagttctcctcgctatctgccacgg                                                                             >  2:682802‑M2/1‑9 (MQ=255)                                                                                                                                       aGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCCCCCGCTGCGGTGACGCAACCGCAgatga                                 <  3:905358/113‑1 (MQ=255)                                                                                                                                       aGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCCCCCGCTGCGGTGACGCAACCGCAgatga                                 >  4:905358/1‑113 (MQ=255)                                                                                                                                       |                                                                                                                                                TCCGGATTCAGCAACAGCAGCGTGAAACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCCCCCGCTGCGGTGACGCAACCGCAGATGATTAGTGCCAGACGGAATGAGTGGGTGGTATC  >  NC_000913/4593200‑4593477

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.