New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4593334	NA (NA)	6 (0.070)	6/178	NT	NA	noncoding (9/26 nt)	REP349 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP349 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	= 4593342	NA (NA)					noncoding (17/26 nt)	REP349 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP349 (repetitive extragenic palindromic) element; contains 1 REP sequences

TCCGGATTCAGCAACAGCAGCGTGAAACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCCCCCGCTGCGGTGACGCAACCGCAGATGATTAGTGCCAGACGGAATGAGTGGGTGGTATCAACAATAAA  >  NC_000913/4593200‑4593486                                                                                                                                               |                                                                                                                                                 tCCGGATTCAGCAACAGCAGCGTGAAACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGttatc                                                                                                                                             <  1:73534‑M2/148‑6 (MQ=255)    ggATTCAGCAACAGCAGCGTGAAACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGttatcggg                                                                                                                                          <  4:828290‑M2/148‑9 (MQ=255)            cAACAGCAGCGTGAAACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGttat                                                                                                                                              >  1:395940‑M2/1‑132 (MQ=255)            cAACAGCAGCGTGAAACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGttat                                                                                                                                              <  2:395940‑M2/136‑5 (MQ=255)                                    gtgGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTg                                                                                                          >  4:282777/1‑148 (MQ=255)                                      ggTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGAt                                                                                                        <  3:282777/148‑1 (MQ=255)                                          aaaaCCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGttatcg                                                                                                                                            >  1:475362‑M2/1‑102 (MQ=255)                                          aaaaCCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGttatcg                                                                                                                                            <  2:475362‑M2/108‑7 (MQ=255)                                            aaCCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTg                                                                                                                  >  3:915369/1‑132 (MQ=255)                                            aaCCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTg                                                                                                                  <  4:915369/132‑1 (MQ=255)                                                    cGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCa                                                                                          <  3:828290/148‑1 (MQ=255)                                                         gCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTaa                                                                                                                            >  2:514003/1‑109 (MQ=255)                                                         gCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTaa                                                                                                                            <  1:514003/109‑1 (MQ=255)                                                          cTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGa                                                                                    <  2:73534/148‑1 (MQ=255)                                                                    tAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAAcc                                                                                           <  4:786018/131‑1 (MQ=255)                                                                    tAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAAcc                                                                                           >  3:786018/1‑131 (MQ=255)                                                                    tAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAAcc                                                                                           >  2:184619/1‑131 (MQ=255)                                                                    tAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAAcc                                                                                           <  1:184619/131‑1 (MQ=255)                                                                     aaaaTGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTg                                                                                                                  <  4:367102/107‑1 (MQ=255)                                                                     aaaaTGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTg                                                                                                                  >  3:367102/1‑107 (MQ=255)                                                                                 gCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGa                                                                                       <  4:87372/122‑1 (MQ=255)                                                                                 gCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGa                                                                                       >  3:87372/1‑122 (MQ=255)                                                                                                        aaCATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAAt                                                                                                                           <  4:465861/63‑1 (MQ=255)                                                                                                        aaCATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAAt                                                                                                                           >  3:465861/1‑63 (MQ=255)                                                                                                        aaCATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGAt                                                                                   <  2:1009302/103‑1 (MQ=255)                                                                                                        aaCATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGAt                                                                                   >  1:1009302/1‑103 (MQ=255)                                                                                                        aaCATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCCCCCGCTGCGGTGACGCAACCGCAg                                              >  3:695765/1‑140 (MQ=255)                                                                                                        aaCATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCCCCCGCTGCGGTGACGCAACCGCAg                                              <  4:695765/140‑1 (MQ=255)                                                                                                            ttttAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGa                                                                                    <  2:551469/98‑1 (MQ=255)                                                                                                            ttttAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGa                                                                                    >  1:551469/1‑98 (MQ=255)                                                                                                                      cATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCCCCCGCTGCGGTGACGCAACCGCAGATGATTAg                                      <  3:297713/134‑1 (MQ=255)                                                                                                                      cATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCCCCCGCTGCGGTGACGCAACCGCAGATGATTAg                                      >  4:297713/1‑134 (MQ=255)                                                                                                                         gAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTg                                                                                                                  >  3:929277/1‑55 (MQ=255)                                                                                                                         gAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTg                                                                                                                  <  4:929277/55‑1 (MQ=255)                                                                                                                                cccGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCCCCCGCTGCGGTGACGCAACCGCAGATGATTAGTGCCAGACGGAATGAGTGggtggt              >  4:62321/1‑148 (MQ=255)                                                                                                                                  cGATAAGCAAAATGttatcgggcattttcatggcgattaaaatgtttcccagttctcctcgctatctg                                                                                            <  3:187087‑M2/68‑55 (MQ=255)                                                                                                                                  cGATAAGCAAAATGttatcgggcattttcatggcgattaaaatgtttcccagttctcctcgctatctg                                                                                            >  4:187087‑M2/1‑14 (MQ=255)                                                                                                                                  cGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCCCCCGCTGCGGTGACGCAACCGCAGATGATTAGTGCCAGACGGAATGAGTGGGTGGTAt            <  3:62321/148‑1 (MQ=255)                                                                                                                                   gATAAGCAAAATGttatcgggcattttcatggcgattaaaatgtttcccagttctcct                                                                                                     <  1:136309‑M2/58‑46 (MQ=255)                                                                                                                                   gATAAGCAAAATGttatcgggcattttcatggcgattaaaatgtttcccagttctcct                                                                                                     >  2:136309‑M2/1‑13 (MQ=255)                                                                                                                                    aTAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCCCCCGCTGCGGTGACGCAACCGCAg                                              <  1:114380/112‑1 (MQ=255)                                                                                                                                    aTAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCCCCCGCTGCGGTGACGCAACCGCAg                                              >  2:114380/1‑112 (MQ=255)                                                                                                                                       aGCAAAATGttatcgggcattttcatggcgattaaaatgtttcccagttctcctcgctatctgccacgg                                                                                      >  2:682802‑M2/1‑9 (MQ=255)                                                                                                                                       aGCAAAATGttatcgggcattttcatggcgattaaaatgtttcccagttctcctcgctatctgccacgg                                                                                      <  1:682802‑M2/69‑61 (MQ=255)                                                                                                                                       aGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCCCCCGCTGCGGTGACGCAACCGCAgatga                                          >  4:905358/1‑113 (MQ=255)                                                                                                                                       aGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCCCCCGCTGCGGTGACGCAACCGCAgatga                                          <  3:905358/113‑1 (MQ=255)                                                                                                                                         cAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGt                                                                         <  4:804917/80‑1 (MQ=255)                                                                                                                                         cAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGt                                                                         >  3:804917/1‑80 (MQ=255)                                                                                                                                           aaaaGTTATCGGGCATAAGGAGACTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCCCCCGCTGCGGTGACGCAACCGCAGATGATTAGTGCCAGACGGAATGAGTGGGTGGTATCAACAATaa   >  1:956644/1‑148 (MQ=255)                                                                                                                                            aaTGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCCCCCGCTGCGGTGACGCAACCGCAGATGATTAGTGCCAGACGGa                           >  2:641790/1‑123 (MQ=255)                                                                                                                                            aaTGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCCCCCGCTGCGGTGACGCAACCGCAGATGATTAGTGCCAGACGGa                           <  1:641790/123‑1 (MQ=255)                                                                                                                                            aaTGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCCCCCGCTGCGGTGACGCAACCGCAGATGATTAGTGCCAGACGGAATGAGTGGGTGGTATCAACAATaaa  >  2:992961/1‑148 (MQ=255)                                                                                                                                               gTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATg                                                                                  >  4:549963/1‑65 (MQ=255)                                                                                                                                               gTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATg                                                                                  <  3:549963/65‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                 TCCGGATTCAGCAACAGCAGCGTGAAACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAAGCAAAATGTTATCGGGCATAAGGAGATTAATCTTTACGTGGGTCGTTGATCGGCTGACGAACCAGGAAGATGTACGCCAGTGCCCCCGCTGCGGTGACGCAACCGCAGATGATTAGTGCCAGACGGAATGAGTGGGTGGTATCAACAATAAA  >  NC_000913/4593200‑4593486

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.