BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4639198 =	77 (0.820)	4 (0.050)	4/188	NT	4.4%	coding (1021/1353 nt)	creD	inner membrane protein
*	?	NC_000913	4639248 =	101 (1.150)	4 (0.050)	4/188	NT	4.4%	coding (1071/1353 nt)	creD	inner membrane protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 109 total aligned reads displayed.

GACCGGGCGACTAAGTACGCCATTCTGCTGATTGCACTGACTTTTATGGCGTTCTTTGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGA  >  NC_000913/4639054‑4639343

aacaacagcgcgctatcggcagagttgagcagtccccacatcacaccatccagcaacaacagcgcgagggtaaacaacatgctgttgcaccaacctttcaataccgcttgcaaataaataccgttcattatcgccccaatcagaCTgg                                                                                                                                                <  3:994348‑M1/4‑1 (MQ=255)

 acaacagcgcgctatcggcagagttgagcagtccccacatcacaccatccagcaacaacagcgcgagggtaaacaacatgctgttgcaccaacctttcaataccgcttgcaaataaataccgttcattatcgccccaatcagaCTGgc                                                                                                                                               <  4:561759‑M1/5‑1 (MQ=255)

          cTAAGTACGCCATTCTGCTGATTGCACTGACTTTTATGGCGTTCTTTGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTgg                                                                                                                                                <  4:231965/138‑1 (MQ=255)

          cTAAGTACGCCATTCTGCTGATTGCACTGACTTTTATGGCGTTCTTTGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTgg                                                                                                                                                >  3:231965/1‑138 (MQ=255)

                     gagttgagcagtccccacatcacaccatccagcaacaacagcgcgagggtaaacaacatgctgttgcaccaacctttcaataccgcttgcaaataaataccgttcattatcgccccaatcagaCTGgcg                                                                                                                                              <  4:115905‑M1/6‑1 (MQ=255)

                     gagttgagcagtccccacatcacaccatccagcaacaacagcgcgagggtaaacaacatgctgttgcaccaacctttcaataccgcttgcaaataaataccgttcattatcgccccaatcagaCTGgcg                                                                                                                                              >  3:115905‑M1/124‑129 (MQ=255)

                       tCTGCTGATTGCACTGACTTTTATGGCGTTCTTTGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGtttt                                                                                                                         >  1:373734/1‑148 (MQ=255)

                               ttGCACTGACTTTTATGGCGTTCTTTGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGc                                                                                                                 >  3:1107367/1‑148 (MQ=255)

                                   ccacatcacaccatccagcaacaacagcgcgagggtaaacaacatgctgttgcaccaacctttcaataccgcttgcaaataaataccgttcattatcgccccaatcagaCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATgg                                                                                                             <  2:46129‑M1/39‑1 (MQ=255)

                                   aCTGACTTTTATGGCGTTCTTTGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATgg                                                                                                             <  2:373734/148‑1 (MQ=255)

                                    cTGACTTTTATGGCGTTCTTTGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCgg                                                                                                                             >  3:697931/1‑131 (MQ=255)

                                    cTGACTTTTATGGCGTTCTTTGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCgg                                                                                                                             <  4:697931/131‑1 (MQ=255)

                                    cTGACTTTTATGGCGTTCTTTGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGtt                                                                                                                           <  2:925999/133‑1 (MQ=255)

                                    cTGACTTTTATGGCGTTCTTTGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGtt                                                                                                                           >  1:925999/1‑133 (MQ=255)

                                    cTGACTTTTATGGCGTTCTTTGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGa                                                                                                            >  3:888655/1‑148 (MQ=255)

                                      gACTTTTATGGCGTTCTTTGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGt                                                                                                                            >  3:253163/1‑130 (MQ=255)

                                      gACTTTTATGGCGTTCTTTGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGt                                                                                                                            <  4:253163/130‑1 (MQ=255)

                                      gACTTTTATGGCGTTCTTTGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATa                                                                                                          >  3:295333/1‑148 (MQ=255)

                                          tttATGGCGTTCTTTGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCg                                                                                                      >  3:990971/1‑148 (MQ=255)

                                          tttATGGCGTTCTTTGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCg                                                                                                      >  1:774705/1‑148 (MQ=255)

                                          tttATGGCGTTCTTTGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCg                                                                                                      >  2:472709/1‑148 (MQ=255)

                                            tATGGCGTTCTTTGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGcc                                                                                                    <  4:1107367/148‑1 (MQ=255)

                                                 cGTTCTTTGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCttt                                                                                                                                          <  2:976110/105‑1 (MQ=255)

                                                 cGTTCTTTGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCttt                                                                                                                                          >  1:976110/1‑105 (MQ=255)

                                                   ttCTTTGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGa                                                                                             <  4:888655/148‑1 (MQ=255)

                                                    tCTTTGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATAcc                                                                                                                               >  3:965710/1‑113 (MQ=255)

                                                    tCTTTGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATAcc                                                                                                                               <  4:965710/113‑1 (MQ=255)

                                                    tCTTTGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGAt                                                                                            <  1:472709/148‑1 (MQ=255)

                                                       ttGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCt                                                                                                                                                  <  3:853213/91‑1 (MQ=255)

                                                       ttGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCt                                                                                                                                                  >  4:853213/1‑91 (MQ=255)

                                                       ttGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCt                                                                                                                                            <  1:325865/97‑1 (MQ=255)

                                                       ttGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCt                                                                                                                                            >  2:325865/1‑97 (MQ=255)

                                                       ttGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTgg                                                                                         <  2:774705/148‑1 (MQ=255)

                                                             ttGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGt                                                                                                                            <  1:556653/107‑1 (MQ=255)

                                                             ttGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGt                                                                                                                            >  2:556653/1‑107 (MQ=255)

                                                                 aaCGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGt                                                                                                                            <  3:72107/103‑1 (MQ=255)

                                                                 aaCGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGt                                                                                                                            >  4:72107/1‑103 (MQ=255)

                                                                       cACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGa                                                                              <  1:683654/143‑1 (MQ=255)

                                                                       cACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGa                                                                              >  2:683654/1‑143 (MQ=255)

                                                                         acaacatgctgttgcaccaacctttcaataccgcttgcaaataaataccgttcattatcgccccaatcagaCTgg                                                                                                                                                >  2:109885‑M1/72‑75 (MQ=255)

                                                                         acaacatgctgttgcaccaacctttcaataccgcttgcaaataaataccgttcattatcgccccaatcagaCTgg                                                                                                                                                <  1:109885‑M1/4‑1 (MQ=255)

                                                                            acatgctgttgcaccaacctttcaataccgcttgcaaataaataccgttcattatcgccccaatcagaCTg                                                                                                                                                 >  3:792020‑M1/69‑71 (MQ=255)

                                                                            acatgctgttgcaccaacctttcaataccgcttgcaaataaataccgttcattatcgccccaatcagaCTg                                                                                                                                                 <  4:792020‑M1/3‑1 (MQ=255)

                                                                               tgctgttgcaccaacctttcaataccgcttgcaaataaataccgttcattatcgccccaatcagaCTg                                                                                                                                                 >  1:956842‑M1/66‑68 (MQ=255)

                                                                               tgctgttgcaccaacctttcaataccgcttgcaaataaataccgttcattatcgccccaatcagaCTg                                                                                                                                                 <  2:956842‑M1/3‑1 (MQ=255)

                                                                                         cccAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGCGGTa                                                       >  1:195339/1‑148 (MQ=255)

                                                                                         cccAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGCGGTa                                                       <  2:935682/148‑1 (MQ=255)

                                                                                         ccaacctttcaataccgcttgcaaataaataccgttcattatcgccccaatcagaCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGcc                                                                                                    <  1:472416‑M1/48‑1 (MQ=255)

                                                                                         ccaacctttcaataccgcttgcaaataaataccgttcattatcgccccaatcagaCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGcc                                                                                                    >  2:472416‑M1/56‑103 (MQ=255)

                                                                                          ccAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTg                                                                                                                                                 >  2:505236/1‑57 (MQ=255)

                                                                                          ccAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTg                                                                                                                                                 <  1:505236/57‑1 (MQ=255)

                                                                                          ccAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTg                                                                                              <  2:497421/108‑1 (MQ=255)

                                                                                          ccAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTg                                                                                              >  1:497421/1‑108 (MQ=255)

                                                                                           ccaTGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGa                                                                              <  1:27550/121‑1 (MQ=255)

                                                                                           cAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCt                                                                                                                                                  >  2:280/1‑55 (MQ=255)

                                                                                           cAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCt                                                                                                                                                  <  1:280/55‑1 (MQ=255)

                                                                                           cAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCa                                                                                                                >  4:229492/1‑89 (MQ=255)

                                                                                           cAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCa                                                                                                                <  3:229492/89‑1 (MQ=255)

                                                                                           cAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGTTAACCGCCATTCGGTTGGGGGCGAAATTGACGGTTATTTATTT‑CCAGCGGGATTg                                                    >  1:522125/1‑148 (MQ=255)

                                                                                           cAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGa                                                                              >  2:27550/1‑123 (MQ=255)

                                                                                           cAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGtatttatt                                                                  >  3:803714/1‑135 (MQ=255)

                                                                                           cAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGtatttatt                                                                  <  4:803714/135‑1 (MQ=255)

                                                                                           cAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGtatttatt                                                                  <  1:24701/135‑1 (MQ=255)

                                                                                           cAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGtatttatt                                                                  >  2:24701/1‑135 (MQ=255)

                                                                                             aTGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATa                                                                                                                                 >  3:649027/1‑70 (MQ=255)

                                                                                              tGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGCGGTATTGaa                                                  >  3:756861/1‑148 (MQ=255)

                                                                                               gCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTgg                                                                                         <  4:802811/108‑1 (MQ=255)

                                                                                               gCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGCGGTATTGaaa                                                 >  1:435283/1‑148 (MQ=255)

                                                                                                    atTTGTTGTTGGGGTTTTCATGGTTGTTTTTTTTTTTGCCTTTGCTGGCCTTTTCTGACCATACCGTTTTTCCGGTGGC‑TGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTgg                                           <  2:522125/148‑1 (MQ=255)

                                                                                                     tttGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTgg                                           <  4:295333/148‑1 (MQ=255)

                                                                                                                  cTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCAtgt                              >  4:827486/1‑148 (MQ=255)

                                                                                                                    ttCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATa                                                                                  <  4:236766/94‑1 (MQ=255)

                                                                                                                    ttCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCAtgttg                            >  1:29238/1‑148 (MQ=255)

                                                                                                                       aTTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTgg                                           >  4:414366/1‑130 (MQ=255)

                                                                                                                       aTTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTgg                                           <  3:414366/130‑1 (MQ=255)

                                                                                                                         tGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGtt                                             >  1:499487/1‑126 (MQ=255)

                                                                                                                         tGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGtt                                             <  2:499487/126‑1 (MQ=255)

                                                                                                                         tGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTAc                       <  3:827486/148‑1 (MQ=255)

                                                                                                                             gATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGa                                                                              <  2:165155/89‑1 (MQ=255)

                                                                                                                             gATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGa                                                                              >  1:165155/1‑89 (MQ=255)

                                                                                                                               tGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGt                                                                         >  4:206474/1‑92 (MQ=255)

                                                                                                                               tGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGt                                                                         <  3:206474/92‑1 (MQ=255)

                                                                                                                                gTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCaa                                      >  3:364520/1‑126 (MQ=255)

                                                                                                                                gTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCaa                                      <  4:364520/126‑1 (MQ=255)

                                                                                                                                  tttATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATa                                                                                  >  1:351848/1‑80 (MQ=255)

                                                                                                                                  tttATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCt              >  1:1087755/1‑148 (MQ=255)

                                                                                                                                       ttGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGCGGTAtt                                                     <  4:47159/104‑1 (MQ=255)

                                                                                                                                       ttGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGCGGTAtt                                                     >  3:47159/1‑104 (MQ=255)

                                                                                                                                          ctctTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTgg                                           >  1:647325/1‑111 (MQ=255)

                                                                                                                                          ctctTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTgg                                           <  2:647325/111‑1 (MQ=255)

                                                                                                                                           tctTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGCGGTAt                                                      <  3:909837/99‑1 (MQ=255)

                                                                                                                                           tctTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGCGGTAt                                                      >  4:909837/1‑99 (MQ=255)

                                                                                                                                           tctTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCt     <  2:29238/148‑1 (MQ=255)

                                                                                                                                            ctTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGc                                                           >  3:842394/1‑93 (MQ=255)

                                                                                                                                            ctTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGc                                                           <  4:842394/93‑1 (MQ=255)

                                                                                                                                              tGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGa  <  2:1087755/148‑1 (MQ=255)

                                                                                                                                                CTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGaa                                                                             >  2:936318‑M1/1‑71 (MQ=255)

                                                                                                                                                CTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGaa                                                                             <  1:936318‑M1/71‑1 (MQ=255)

                                                                                                                                                CTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGtatttatt                                                                  <  3:486809‑M1/82‑1 (MQ=255)

                                                                                                                                                CTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGtatttatt                                                                  >  4:486809‑M1/1‑82 (MQ=255)

GACCGGGCGACTAAGTACGCCATTCTGCTGATTGCACTGACTTTTATGGCGTTCTTTGTTTTTGAAACGCTCACCGCGCAACGTTTACACCCAATGCAATATTTGCTGGTGGGGCTTTCATTGGTGATGTTTTATTTGCTCTTGCTGGCGCTTTCTGAACATACCGGTTTTACCGTGGCATGGATAATCGCCAGTCTGATTGGGGCGATAATGAACGGTATTTATTTGCAAGCGGTATTGAAAGGTTGGTGCAACAGCATGTTGTTTACCCTCGCGCTGTTGTTGCTGGA  >  NC_000913/4639054‑4639343

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.