Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	583490	583581	92	14 [8]	[12] 16	tfaX/appY	pseudogene, DLP12 prophage;Phage or Prophage Related/global transcriptional activator; DLP12 prophage

GAAATGCAAGTAAAAATGATACTCTTTTTATTTTAAATTCAAACGGTTGACATATATATAGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGAATAAAAAACA  >  NC_000913/583361‑583517                                                                                                                                 |                             gAAATGCAAGTAAAAATGATACTCTTTTTATTTTAAATTCAAACGGTTGACATATATATAGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTa                              >  3:1059081/1‑129 (MQ=255) gAAATGCAAGTAAAAATGATACTCTTTTTATTTTAAATTCAAACGGTTGACATATATATAGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTa                              <  4:1059081/129‑1 (MQ=255)                                tttaAATTCAAACGGTTGACATATATATAGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTa                              <  1:631955/98‑1 (MQ=255)                                tttaAATTCAAACGGTTGACATATATATAGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTa                              >  2:631955/1‑98 (MQ=255)                                tttaAATTCAAACGGTTGACATATATATAGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTa                              >  3:757868/1‑98 (MQ=255)                                tttaAATTCAAACGGTTGACATATATATAGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTa                              <  4:757868/98‑1 (MQ=255)                                                tGACATATATATAGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGaa                      <  1:270339/90‑1 (MQ=255)                                                tGACATATATATAGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGaa                      >  2:270339/1‑90 (MQ=255)                                                     tatatataGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGAATAAAAaaca  <  3:324372/105‑1 (MQ=255)                                                     tatatataGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGAATAAAAaaca  >  4:324372/1‑105 (MQ=255)                                                             gCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGaa           >  3:243415/1‑88 (MQ=255)                                                             gCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGaa           <  4:243415/88‑1 (MQ=255)                                                                 gagGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGa            <  3:543668/83‑1 (MQ=255)                                                                 gagGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGa            >  4:543668/1‑83 (MQ=255)                                                                                                                                 |                             GAAATGCAAGTAAAAATGATACTCTTTTTATTTTAAATTCAAACGGTTGACATATATATAGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGAATAAAAAACA  >  NC_000913/583361‑583517

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑