| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4638136 = | 181 (0.900) | 4 (0.020) | 4/264 | NT | 2.3% | intergenic (+16/‑42) | creC/creD | sensory histidine kinase in two‑component regulatory system with CreB or PhoB/inner membrane protein |
| ? | NC_000913 | 4638182 = | 176 (0.950) | coding (5/1353 nt) | creD | inner membrane protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TACGGTAATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4638292‑4638136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagactatgtTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAAAACCGTGGAGCGGAAACGAAGTTTTATCCATTTTTGGTTACCTGAGTCATTG > NC_000913/4638182‑4638453 TACGGTAATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAA > 8:673411/1‑149TACGGTAATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAA < 5:1154085/149‑1TACGGTAATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAA > 8:522058/1‑149TACGGTAATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAA < 6:665561/149‑1TACGGTAATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAA < 5:924497/149‑1 CGGTAATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGA < 7:736436/149‑1 CGGTAATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGA < 5:568233/149‑1 GGTAATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGAC < 6:1434229/149‑1 GGTAATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGAC > 8:508540/1‑149 GTAATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACT > 7:824577/1‑149 GTAATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACT < 5:321735/149‑1 AATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTAT < 7:268143/149‑1 ATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATG < 8:483389/149‑1 TCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGT < 6:589387/149‑1 TCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGT < 8:1438149/149‑1 TCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGA < 8:1424036/140‑1 TCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGA > 7:1424036/1‑140 TCAACACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAAGTTAATCATTTTCCAGAACACGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGGTACGAAGACTCTGT > 8:528447/1‑149 GGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGA > 8:884770/1‑104 GGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGA < 7:884770/104‑1 ACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGAC > 8:46712/1‑82 ACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGAC < 7:46712/82‑1 TTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTG > 8:67257/1‑149 TCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGC > 5:854003/1‑149 AACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTG > 6:129448/1‑149 CATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGAT < 6:854003/149‑1 GAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAACGATGTGGAAGATGCGATTAGCCAAA > 5:1136100/1‑149 AAGATTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAG < 8:358781/149‑1 AAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAG < 8:1447656/149‑1 AAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCAATTCGCCAAAG > 8:142314/1‑149 AAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTA > 6:249658/1‑116 AAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTA < 5:249658/116‑1 GACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTA > 6:474990/1‑149 GACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTA > 5:554365/1‑149 ACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTAC > 6:222540/1‑149 ACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTAC < 6:1077865/149‑1 ACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTAC > 5:942727/1‑149 TATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGTCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGC > 8:1379669/1‑105 TATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGGCTGTTTGATGCAGTATTGCTGTTGTTAATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCA > 7:910267/1‑149 TATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGC < 7:1379669/105‑1 TGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCTGCCCCCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAACTTTATCCGGTGCAGGAAGTGGATAAACCCGGTGTGCGGACACGAAGTGTTATCCATTTTTGGTTACCTGATTCctgt > 4:36780/1‑271 TGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAACACCGTGGAGCGGAAACGAATTTTTATCCATTTTTGGTTACCTGAGTCATTG > 2:210034/1‑275 TGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGC > 2:375245/1‑130 GTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCG > 8:483604/1‑149 TTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGG > 5:179250/1‑149 TTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGG < 5:1327092/149‑1 TTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGG > 6:189223/1‑149 TACGGTAATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4638292‑4638136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagactatgtTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGGGCCGCAAAAACTCGTTGGGCCGCTCATCGCTATTCCTGTGACCGAGCTTTATACGGTGCAGGAAGAGGATAAAACCGTGGAGCGGAAACGAAGTTTTATCCATTTTTGGTTACCTGAGTCATTG > NC_000913/4638182‑4638453 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |