| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4638136 = | 146 (0.900) | 4 (0.030) | 4/240 | NT | 2.7% | intergenic (+16/‑42) | creC/creD | sensory histidine kinase in two‑component regulatory system with CreB or PhoB/inner membrane protein |
| ? | NC_000913 | 4638182 = | 151 (1.020) | coding (5/1353 nt) | creD | inner membrane protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TACGGTAATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4638292‑4638136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagactatgtTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGG > NC_000913/4638182‑4638329 TACGGTAATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAA < 1:1154085/149‑1TACGGTAATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAA > 4:673411/1‑149TACGGTAATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAA > 4:522058/1‑149TACGGTAATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAA < 2:665561/149‑1TACGGTAATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAA < 1:924497/149‑1 CGGTAATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGA < 1:568233/149‑1 CGGTAATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGA < 3:736436/149‑1 GGTAATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGAC > 4:508540/1‑149 GGTAATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGAC < 2:1434229/149‑1 GTAATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACT < 1:321735/149‑1 GTAATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACT > 3:824577/1‑149 AATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTAT < 3:268143/149‑1 ATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATG < 4:483389/149‑1 TCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGT < 2:589387/149‑1 TCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGT < 4:1438149/149‑1 TCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGA < 4:1424036/140‑1 TCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGA > 3:1424036/1‑140 TCAACACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAAGTTAATCATTTTCCAGAACACGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGGTACGAAGACTCTGT > 4:528447/1‑149 GGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGA > 4:884770/1‑104 GGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGA < 3:884770/104‑1 ACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGAC > 4:46712/1‑82 ACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGAC < 3:46712/82‑1 TTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTG > 4:67257/1‑149 TCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGC > 1:854003/1‑149 AACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTG > 2:129448/1‑149 CATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGAT < 2:854003/149‑1 GAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAACGATGTGGAAGATGCGATTAGCCAAA > 1:1136100/1‑149 AAGATTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAG < 4:358781/149‑1 AAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAG < 4:1447656/149‑1 AAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCAATTCGCCAAAG > 4:142314/1‑149 AAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTA < 1:249658/116‑1 AAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTA > 2:249658/1‑116 GACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTA > 2:474990/1‑149 GACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTA > 1:554365/1‑149 ACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTAC > 1:942727/1‑149 ACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTAC < 2:1077865/149‑1 ACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTAC > 2:222540/1‑149 TATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGTCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGC > 4:1379669/1‑105 TATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGGCTGTTTGATGCAGTATTGCTGTTGTTAATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCA > 3:910267/1‑149 TATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGC < 3:1379669/105‑1 GTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCG > 4:483604/1‑149 TTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGG > 2:189223/1‑149 TTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGG > 1:179250/1‑149 TTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGG < 1:1327092/149‑1 TACGGTAATCAGCACGTTCGACAATCACCTGCCGAATCAGCATTATCGGAATCAACAACAGCAATACTGCACCAAACAGGCTAGTCATTTTCCAGAACAGGGGGGATTTCAACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4638292‑4638136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagactatgtTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGATTACCGTAGCGATGTGGAAGATGCGATTCGCCAAAGTACCAGCGG > NC_000913/4638182‑4638329 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |