New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4638136 =146 (0.900)4 (0.030) 4/240 NT 2.7% intergenic (+16/‑42) creC/creD sensory histidine kinase in two‑component regulatory system with CreB or PhoB/inner membrane protein
?NC_000913 4638182 = 151 (1.020)coding (5/1353 nt) creD inner membrane protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 193 total aligned reads displayed.

GCAAAAAAGCAGCGGTCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGA  >  NC_000913/4637988‑4638284
                                                                                                                                                    |                                                                                                                                                     
gCAAAAAAGCAGCGGTCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCca                                                                                                                                                       >  4:6651/1‑149 (MQ=255)
ccgctggtactttggcgaatcgcatcttccacatcgctacggtaatcagcacgttcgacaatcacctgccgaatcagcattatcggaatcaacaacagcaatactgcaccaaacaggctagtcattttccagaacaggggggatttcaa                                                                                                                                                       >  1:179250‑M1/149‑149 (MQ=255)
 cgctggtactttggcgaatcgcatcttccacatcgctacggtaatcagcacgttcgacaatcacctgccgaatcagcattatcggaatcaacaacagcaatactgcaccaaacaggctagtcattttccagaacaggggggatttcaAc                                                                                                                                                      >  4:483604‑M1/148‑149 (MQ=255)
  aaaaaaGCAGCGGTCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCcaca                                                                                                                                                     >  3:528447/1‑149 (MQ=255)
  aaaaaaGCAGCGGTCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCcaca                                                                                                                                                     >  2:1195192/1‑149 (MQ=255)
  aaaaaaGCAGCGGTCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCcaca                                                                                                                                                     >  1:1344335/1‑149 (MQ=255)
  aaaaaaGCAGCGGTCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCcaca                                                                                                                                                     >  3:298879/1‑149 (MQ=255)
      gtactttggcgaatcgcatcttccacatcgctacggtaatcagcacgttcgacaatcacctgccgaatcagcattatcggaatcaacaacagcaatactgcaccaaacaggctagtcattttccagaacaggggggatttcaACATAGt                                                                                                                                                 >  2:222540‑M1/143‑149 (MQ=255)
      gtactttggcgaatcgcatcttccacatcgctacggtaatcagcacgttcgacaatcacctgccgaatcagcattatcggaatcaacaacagcaatactgcaccaaacaggctagtcattttccagaacaggggggatttcaACATAGt                                                                                                                                                 >  1:942727‑M1/143‑149 (MQ=255)
       tactttggcgaatcgcatcttccacatcgctacggtaatcagcacgttcgacaatcacctgccgaatcagcattatcggaatcaacaacagcaatactgcaccaaacaggctagtcattttccagaacaggggggatttcaACATAGTc                                                                                                                                                >  2:474990‑M1/142‑149 (MQ=255)
         ctttggcgaattgcatcttccacatcgctacggtaatcagcacgttcgacaatcacctgccgaatcagcattatcggaatcaacaacagcaatactgcaccaaacaggctagtcattttccagaacaggggggatttcaACATAGTCtt                                                                                                                                              >  4:142314‑M1/140‑149 (MQ=255)
         ctttggcgaatcgcatcttccacatcgctacggtaatcagcacgttcgacaatcacctgccgaatcagcattatcggaatcaacaacagcaatactgcaccaaacaggctagtcattttccagaacaggggggatttcaACATAGTCtt                                                                                                                                              <  4:1447656‑M1/10‑1 (MQ=255)
          tttggctaatcgcatcttccacatcgttacggtaatcagcacgttcgacaatcacctgccgaatcagcattatcggaatcaacaacagcaatactgcaccaaacaggctagtcattttccagaacaggggggatttcaACATAGTCTTc                                                                                                                                             >  1:1136100‑M1/139‑149 (MQ=255)
          agcGGTCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTc                                                                                                                                             <  3:708640/149‑1 (MQ=255)
          agcGGTCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCAACATAGTCTTc                                                                                                                                             <  3:827342/149‑1 (MQ=255)
                 tGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCct                                                                                                                                      >  2:153604/1‑149 (MQ=255)
                      ttGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCtgctgc                                                                                                                                 <  1:883464/149‑1 (MQ=255)
                      ttGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCtgctgc                                                                                                                                 <  3:78430/149‑1 (MQ=255)
                          cGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCAtt                                                                                                                             <  2:930825/149‑1 (MQ=255)
                            ttCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCtgctgc                                                                                                                                 >  1:599845/1‑143 (MQ=255)
                            ttCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGc                                                                                                                           >  2:1327092/1‑149 (MQ=255)
                                tCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAg                                                                                                                       <  1:162471/149‑1 (MQ=255)
                                tCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAg                                                                                                                       <  3:6651/149‑1 (MQ=255)
                                tCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAg                                                                                                                       >  4:1331157/1‑149 (MQ=255)
                                  aGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGg‑a                                                                                                                    <  4:289705/149‑1 (MQ=255)
                                    tGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGg‑aga                                                                                                                  >  3:473126/1‑149 (MQ=255)
                                     gAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑agaa                                                                                                                 <  2:393447/149‑1 (MQ=255)
                                           gCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTAt                                                                                                           <  3:35258/149‑1 (MQ=255)
                                            atcagcacgttcgacaatcacctgccgaatcagcattatcggaatcaacaacagcaatactgcaccaaacaggctagtcattttccagaacaggggggatttcaACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATg                                                                                                          <  2:854003‑M1/45‑1 (MQ=255)
                                              cagcacgttcgacaatcacctgccgaatcagcattatcggaatcaacaacagcaatactgcaccaaacaggctagtcattttccagaacaggggggatttcaACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGtt                                                                                                        >  2:129448‑M1/103‑149 (MQ=255)
                                              cGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGtt                                                                                                        <  1:259957/149‑1 (MQ=255)
                                                tttgtttAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGa                                                                                                      >  3:395974/1‑149 (MQ=255)
                                                gcacgttcgacaatcacctgccgaatcagcattatcggaatcaacaacagcaatactgcaccaaacaggctagtcattttccagaacaggggggatttcaACATa                                                                                                                                                   <  3:1379669‑M1/5‑1 (MQ=255)
                                                    tttAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATc                                                                                                  <  2:1087659/149‑1 (MQ=255)
                                                     ttAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATcc                                                                                                 >  4:1308180/1‑149 (MQ=255)
                                                        aCGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATccccc                                                                                              >  4:1028261/1‑149 (MQ=255)
                                                          ggCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCt                                                                                            >  1:1233247/1‑149 (MQ=255)
                                                          ggCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCt                                                                                            >  4:510540/1‑149 (MQ=255)
                                                           gCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAg                                                                                                                       <  4:403503/122‑1 (MQ=255)
                                                           gCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTg                                                                                           <  4:820966/149‑1 (MQ=255)
                                                             gAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGtt                                                                                         >  1:990208/1‑149 (MQ=255)
                                                               aGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCt                                                                                       <  4:858230/149‑1 (MQ=255)
                                                               aGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCt                                                                                       <  3:1147942/149‑1 (MQ=255)
                                                                 tCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTgg                                                                                     <  3:68005/149‑1 (MQ=255)
                                                                   aCGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGaa                                                                                   >  4:1371406/1‑149 (MQ=255)
                                                                     gCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGaaaa                                                                                 <  2:732672/149‑1 (MQ=255)
                                                                        gcgcAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGa                                                                              <  4:701359/149‑1 (MQ=255)
                                                                           cAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTa                                                                           <  3:524150/149‑1 (MQ=255)
                                                                            aaCGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAg                                                                          >  1:79734/1‑149 (MQ=255)
                                                                                    ggAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCTCCCCTGTTCTGGAAAATGACTAGCCTGTTTg                                                                  <  2:370515/149‑1 (MQ=255)
                                                                                    ggAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTg                                                                  <  3:895035/149‑1 (MQ=255)
                                                                                          tGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGACATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAg                                                            >  1:476871/1‑149 (MQ=255)
                                                                                           ggCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGt                                                           >  2:1260503/1‑149 (MQ=255)
                                                                                             cGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTAt                                                         <  3:413720/149‑1 (MQ=255)
                                                                                                   ggCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCTTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCtgt                                                   <  2:277176/149‑1 (MQ=255)
                                                                                                    gCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCtgtt                                                  <  1:1302947/149‑1 (MQ=255)
                                                                                                      cTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCtgttgt                                                <  3:794982/149‑1 (MQ=255)
                                                                                                      cTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCtgttgt                                                <  2:51/149‑1 (MQ=255)
                                                                                                       tCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCAtt                                                                                                                             <  4:79069/72‑1 (MQ=255)
                                                                                                       tCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGtt                                                                                                        <  4:1164795/92‑1 (MQ=255)
                                                                                                       tCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGtt                                                                                                        >  3:1164795/1‑92 (MQ=255)
                                                                                                            tCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTc                                          <  2:1233247/149‑1 (MQ=255)
                                                                                                            tCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTc                                          <  2:317868/149‑1 (MQ=255)
                                                                                                             cGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTcc                                         >  1:1067041/1‑149 (MQ=255)
                                                                                                              gACTTCACCGTCACTTCACATTGCTTCAAATTCTTCCCACATAGTCCTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTAGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCg                                        <  1:1470343/149‑1 (MQ=255)
                                                                                                               aCTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGa                                       <  3:1239669/149‑1 (MQ=255)
                                                                                                               aCTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGa                                       <  4:1082539/149‑1 (MQ=255)
                                                                                                                 ttCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATa                                     >  3:508540/1‑149 (MQ=255)
                                                                                                                 ttCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATa                                     >  2:1422647/1‑149 (MQ=255)
                                                                                                                  tCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATaa                                    <  4:618824/149‑1 (MQ=255)
                                                                                                                     ccGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAAtac                                 >  3:323097/1‑147 (MQ=255)
                                                                                                                      cGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCtgtt                                                  <  3:1330268/131‑1 (MQ=255)
                                                                                                                        tCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGa                              >  1:395797/1‑149 (MQ=255)
                                                                                                                         cACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGAt                             <  4:583155/149‑1 (MQ=255)
                                                                                                                            ttCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCg                          >  3:929531/1‑149 (MQ=255)
                                                                                                                            ttCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCg                          >  1:828916/1‑149 (MQ=255)
                                                                                                                               acaTAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGt                                                                     <  3:642318/103‑1 (MQ=255)
                                                                                                                               acaTAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCa                       >  1:732590/1‑149 (MQ=255)
                                                                                                                               acaAAGCCTCCAATTCTTCCCCCCTAGGCCTCCTATCCTTCCGCCCTTGCCAAGGAAGAAG‑CCATGTTGGAATTCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCa                       <  1:1007471/149‑1 (MQ=255)
                                                                                                                                    gCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTc                                          >  2:650044/1‑125 (MQ=255)
                                                                                                                                    gCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTc                                          <  1:650044/125‑1 (MQ=255)
                                                                                                                                      ttCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGAtt                <  1:565968/149‑1 (MQ=255)
                                                                                                                                      ttCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGAtt                >  1:237766/1‑149 (MQ=255)
                                                                                                                                      ttCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGAtt                >  1:307933/1‑149 (MQ=255)
                                                                                                                                      ttCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGAtt                >  3:153610/1‑149 (MQ=255)
                                                                                                                                      ttCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGAtt                >  2:970663/1‑149 (MQ=255)
                                                                                                                                      ttCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGAtt                >  3:966273/1‑149 (MQ=255)
                                                                                                                                       tCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGt                    >  4:177781/1‑144 (MQ=255)
                                                                                                                                       tCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGt                    <  3:177781/144‑1 (MQ=255)
                                                                                                                                            ttcttcCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGCGATTGTCGaa          >  3:1360993/1‑149 (MQ=255)
                                                                                                                                               ttcCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGt       >  4:1407347/1‑149 (MQ=255)
                                                                                                                                                 cccACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGc     <  4:334408/149‑1 (MQ=255)
                                                                                                                                                  ccACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCt    >  4:382585/1‑149 (MQ=255)
                                                                                                                                                  ccACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCt    >  2:63632/1‑149 (MQ=255)
                                                                                                                                                  ccACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCt    >  1:1412789/1‑149 (MQ=255)
                                                                                                                                                  ccACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCAGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCt    >  4:436916/1‑149 (MQ=255)
                                                                                                                                                   cacaTAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTg   >  1:473460/1‑149 (MQ=255)
                                                                                                                                                   cacaTAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTg   >  2:1248935/1‑149 (MQ=255)
                                                                                                                                                    ACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGa  <  2:589387‑M1/149‑1 (MQ=255)
                                                                                                                                                    ACAGAGTCTTCGTACCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCGTGTTCTGGAAAATGATTAACTTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGTTGa  >  4:528447‑M1/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
GCAAAAAAGCAGCGGTCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCGTATCCTGCTGCCATTGCAAAGG‑AGAAGACTATGTTGAAATCCCCCCTGTTCTGGAAAATGACTAGCCTGTTTGGTGCAGTATTGCTGTTGTTGATTCCGATAATGCTGATTCGGCAGGTGATTGTCGAACGTGCTGA  >  NC_000913/4637988‑4638284

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.