New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4024564167 (1.030)4 (0.030) 4/248 NT 2.4% coding (258/489 nt) rfaH transcription antitermination protein
?NC_000913 = 4024614 167 (1.090)coding (208/489 nt) rfaH transcription antitermination protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 207 total aligned reads displayed.

CACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATT  >  NC_000913/4024416‑4024711
                                                                                                                                                    |                                                                                                                                                   
     tCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGACTTTCGGTTTATATACCGATAGCAGATGAATAACCGCCGATGGGACTATCGCTgg                                                                                                                                                >  1:423913/1‑149 (MQ=255)
           tCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGAcgc                                                                                                                                          <  2:805457/149‑1 (MQ=255)
           tCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGAcgc                                                                                                                                          <  2:1248146/149‑1 (MQ=255)
             ggTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACgcgc                                                                                                                                        <  1:27121/149‑1 (MQ=255)
              gTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGcc                                                                                                                                       >  4:688538/1‑149 (MQ=255)
                       gCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCa                                                                                                                               >  3:657781/1‑148 (MQ=255)
                          tGAAACCCTTCGAACGCGCCTTCGGTAATCATCCCCTTATCACGCGGATAATGGTTTGCCGGTTCGACGATGTCTCTCGGGTTATATACCGATGGCTGTTGAATAACCGCCGATTTGACTATCGGTGGCGACGCATCAGAGCCCACGaa                                                                                                                           >  4:850457/1‑149 (MQ=255)
                              aGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTgg                                                                                                                       >  1:541362/1‑149 (MQ=255)
                               gCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGc                                                                                                                      <  3:1143373/149‑1 (MQ=255)
                                ccTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCt                                                                                                                     <  3:1197600/149‑1 (MQ=255)
                                  ttCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGa                                                                                                                   >  2:594897/1‑149 (MQ=255)
                                  ttCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGa                                                                                                                   <  3:15628/149‑1 (MQ=255)
                                     gAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGacac                                                                                                                <  2:864028/149‑1 (MQ=255)
                                         gcgcCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACGGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACcgcg                                                                                                            >  1:1115388/1‑149 (MQ=255)
                                          cgcCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCgg                                                                                                           <  3:1087325/149‑1 (MQ=255)
                                             cTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCgctggcgacccgcggtgtcagccacttcgtgcgctttggcgcgtc                                                                                                        <  1:932202‑M1/149‑46 (MQ=255)
                                              ttCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTcg                                                                                                       >  1:192238/1‑149 (MQ=255)
                                               tCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTcgc                                                                                                      <  4:1010079/149‑1 (MQ=255)
                                                 ggTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGt                                                                                                    <  3:551734/149‑1 (MQ=255)
                                                 ggTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGt                                                                                                    <  3:59658/149‑1 (MQ=255)
                                                  gTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGtt                                                                                                   >  3:177411/1‑149 (MQ=255)
                                                     ataatCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGGTgat                                                                                                <  3:1449757‑M2/149‑4 (MQ=255)
                                                        atCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCgg                                                                                                           <  3:454238/135‑1 (MQ=255)
                                                        atCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCgg                                                                                                           >  4:454238/1‑135 (MQ=255)
                                                        atCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTgatagt                                                                                             <  4:21903‑M2/149‑7 (MQ=255)
                                                         tCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGTTTTATATACCGATAGCTGAGGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTgatagtc                                                                                            >  4:864170‑M2/1‑142 (MQ=255)
                                                         tCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTgatagtc                                                                                            <  4:478826‑M2/149‑8 (MQ=255)
                                                          cACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCg                                                                                           >  3:381286/1‑149 (MQ=255)
                                                           aCCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGt                                                                                          <  1:225469/149‑1 (MQ=255)
                                                           aCCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGt                                                                                          >  2:194958/1‑149 (MQ=255)
                                                              ttATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGt                                                                                       >  1:1062802/1‑149 (MQ=255)
                                                              ttATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGt                                                                                       >  1:1163847/1‑149 (MQ=255)
                                                                aTCACCCGGATAAGGGGTTGTCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTAt                                                                                     <  1:112907/149‑1 (MQ=255)
                                                                aTCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTAt                                                                                     <  3:1419914/149‑1 (MQ=255)
                                                                   aCCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGaa                                                                                  >  3:218811/1‑149 (MQ=255)
                                                                      cGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCa                                                                               >  3:66973/1‑149 (MQ=255)
                                                                        gATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCg                                                                                           >  4:259832/1‑135 (MQ=255)
                                                                            aGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTg                                                                         <  1:1234139/149‑1 (MQ=255)
                                                                            aGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTg                                                                         >  2:1322234/1‑149 (MQ=255)
                                                                             ggggTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGATGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTgg                                                                        <  2:1123665/149‑1 (MQ=255)
                                                                               ggTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGt                                                                      <  1:393298/149‑1 (MQ=255)
                                                                                   gCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCaaa                                                                  <  2:1478901/149‑1 (MQ=255)
                                                                                   gCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCaaa                                                                  <  2:1126621/149‑1 (MQ=255)
                                                                                    ccGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGa                                                                                                                   >  1:1429502/1‑99 (MQ=255)
                                                                                    ccGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAAt                                                                 <  3:958380/149‑1 (MQ=255)
                                                                                      ggATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTc                                                               >  3:1305031/1‑149 (MQ=255)
                                                                                      ggATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTc                                                               >  3:495758/1‑149 (MQ=255)
                                                                                      ggATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTc                                                               <  4:395293/149‑1 (MQ=255)
                                                                                      ggATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTc                                                               >  4:1270177/1‑149 (MQ=255)
                                                                                        aTCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCca                                                             >  3:1370227/1‑149 (MQ=255)
                                                                                              aaTGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACa                                                       <  1:1322234/149‑1 (MQ=255)
                                                                                              aaTGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACa                                                       >  1:491833/1‑149 (MQ=255)
                                                                                              aaTGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACa                                                       >  2:1116321/1‑149 (MQ=255)
                                                                                                 gTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTgg                                                                        <  4:135960/129‑1 (MQ=255)
                                                                                                  tCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCaacgcgacccgcggtgtcagccacttcgtgcgctttggcgcgtcgccagcgatagtc                                                                                            >  1:256685‑M1/1‑51 (MQ=255)
                                                                                                  tCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTa                                                   >  1:610080/1‑149 (MQ=255)
                                                                                                   cTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAg                                                  <  1:678514/149‑1 (MQ=255)
                                                                                                    tttCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGt                                                 >  2:503588/1‑149 (MQ=255)
                                                                                                     ttCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACCTCTGGGTCAAATTCCACAAACAGGTAGtt                                                <  2:95742/149‑1 (MQ=255)
                                                                                                      tCGGTTTATATACCGATAGCTGATGAATAACCGTCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTg                                               <  4:466598/149‑1 (MQ=255)
                                                                                                       cGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTgg                                              <  3:311790/149‑1 (MQ=255)
                                                                                                        ggTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTggg                                             >  2:1160658/1‑149 (MQ=255)
                                                                                                         gTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTgggg                                            >  3:1288348/1‑149 (MQ=255)
                                                                                                         gTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTgggg                                            >  4:753711/1‑149 (MQ=255)
                                                                                                           ttATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGaa                                          <  3:1424122/149‑1 (MQ=255)
                                                                                                                  ccGATAGCTGATGAATAACCGCCGATGGGACTATCGATGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGc                                   >  4:1381522/1‑149 (MQ=255)
                                                                                                                   cGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCt                                  >  2:963042/1‑149 (MQ=255)
                                                                                                                        gCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCactg                             >  3:736717/1‑149 (MQ=255)
                                                                                                                          tgatgaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAAt                                      <  4:236885/138‑1 (MQ=255)
                                                                                                                          tgatgaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCactgac                           <  4:582920/149‑1 (MQ=255)
                                                                                                                          tgatgaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCactgac                           <  2:76052/149‑1 (MQ=255)
                                                                                                                           gatgaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGc                                   >  3:1245290/1‑140 (MQ=255)
                                                                                                                            atgaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTg                                                                         <  3:1188686/101‑1 (MQ=255)
                                                                                                                            atgaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTg                                                                         >  4:1188686/1‑101 (MQ=255)
                                                                                                                              gaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCa                       >  2:6242/1‑149 (MQ=255)
                                                                                                                              gaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCa                       >  4:760291/1‑149 (MQ=255)
                                                                                                                              gaATAACCGCCGATGCGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCa                       >  4:1076486/1‑149 (MQ=255)
                                                                                                                                aTAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGt                     >  2:703241/1‑149 (MQ=255)
                                                                                                                                 tAACCGCCGATGGGACTATCGCTGGCTACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTa                    <  2:399196/149‑1 (MQ=255)
                                                                                                                                 tAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTa                    >  4:1195263/1‑149 (MQ=255)
                                                                                                                                 tAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTa                    >  1:790013/1‑149 (MQ=255)
                                                                                                                                  aaCCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAgg                                                     >  4:875031/1‑115 (MQ=255)
                                                                                                                                        cgATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTc             <  2:315426/149‑1 (MQ=255)
                                                                                                                                        cgATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTc             <  2:1062802/149‑1 (MQ=255)
                                                                                                                                              gACTATCaacgcgacccgcggtgtcagccacttcgtgcgctttggcgcgtcgccagcgatagtcccatcggcggttattcatcagctatcggtatataaaccgaaagacattgtcgatccggcaaccccttatccgggtgataaggtga       >  3:1118696‑M1/1‑7 (MQ=255)
                                                                                                                                              gACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTgatagtcccatcggcggttattcatcagctatcggtatataaaccgaaaga                                                <  2:256685‑M2/108‑52 (MQ=255)
                                                                                                                                              gACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCa                                                                               <  2:557032/77‑1 (MQ=255)
                                                                                                                                              gACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCcacgca       >  3:938909/1‑149 (MQ=255)
                                                                                                                                               aCTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACATACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCcacgcac      >  4:1235805/1‑149 (MQ=255)
                                                                                                                                               aCTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCcacgcac      >  4:380411/1‑149 (MQ=255)
                                                                                                                                               aCTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCcacgcac      >  4:735693/1‑149 (MQ=255)
                                                                                                                                                cTATCaacgcgacccgcggtgtcagccacttctttcgctttggcgcgtcgccagcgatagtcccatcggcggttattcatcagctatcggtatataaaccgaaagacattgtcgagccggcaaccccttatccgggtgataaggtgatt     <  4:1221318‑M1/149‑145 (MQ=255)
                                                                                                                                                cTATCaacgcgacccgcggtgtcagccacttcgtgcgctttggcgcgtcgccagcgatagtcccatcggcggttattcatcagctatcggtatataaaccgaaagacattgtcgatccggcaaccccttatccgggtgataaggtgatt     <  1:903478‑M1/149‑145 (MQ=255)
                                                                                                                                                 tATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTa                                                   >  3:251076/1‑102 (MQ=255)
                                                                                                                                                 tATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGa    >  4:486072/1‑149 (MQ=255)
                                                                                                                                                   tCaacgcgacccgcggtgtcagccacttcgtgcgctttggcgcgtcgccagcgatagtcccatcggcggttattcatcagctatcggtatataaaccgaaagacattgtcgatccggcaaccccttatccgggtgataaggtgattatt  >  2:666139‑M1/1‑2 (MQ=255)
                                                                                                                                                   tCaacgcgacccgcggtgtcagccacttcgtgcgctttggcgcgtcgccagcgatagtcccatcggcggttattcatcagctatcggtatataaaccgaaagacattgtcgatccggcaaccccttatccgggtgataaggtgattatt  >  1:324871‑M1/1‑2 (MQ=255)
                                                                                                                                                   tCaacgcgacccgcggtgtcagccacttcgtgcgctttggcgcgtcgccagcgatagtcccatcggcggttattcatcagctatcggtatataaaccgaaagacattgtcgatccggcaaccccttatccgggtgataaggtgattatt  >  1:1017605‑M1/1‑2 (MQ=255)
                                                                                                                                                   tCaacgcgacccgcggtgtcagccacttcgtgcgctttggcgcgtcgccagcgatagtcccatcggcggttattcatcagctatcggtatataaaccgaaagacattgtcgatccggcaaccccttatccgggtgataaggtgattatt  >  3:697261‑M1/1‑2 (MQ=255)
                                                                                                                                                   tCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGAtt  >  3:1007207/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
CACCATCGGGTTCGGTGAAAATGGCCTGAAAGCCTTCGAACGCGCCTTCGGTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGTTGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATT  >  NC_000913/4024416‑4024711

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.