New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4024564167 (1.030)4 (0.030) 4/248 NT 2.4% coding (258/489 nt) rfaH transcription antitermination protein
?NC_000913 = 4024614 167 (1.090)coding (208/489 nt) rfaH transcription antitermination protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 216 total aligned reads displayed.

GTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGCCTGTCTTTCGAGG  >  NC_000913/4024466‑4024762
                                                                                                                                                     |                                                                                                                                                    
gTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGt‑t                                                                                                                                                      >  4:529361/1‑149 (MQ=255)
  aataatCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑Tga                                                                                                                                                    >  1:1017605‑M2/1‑147 (MQ=255)
  aataatCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑Tga                                                                                                                                                    >  3:697261‑M2/1‑147 (MQ=255)
  aataatCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑Tga                                                                                                                                                    >  1:324871‑M2/1‑147 (MQ=255)
   ataatCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGG‑Tgat                                                                                                                                                   <  3:1449757‑M2/149‑4 (MQ=255)
      atCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑Tgatagt                                                                                                                                                <  4:21903‑M2/149‑7 (MQ=255)
        cACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCg                                                                                                                                              >  3:381286/1‑149 (MQ=255)
         aCCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGt                                                                                                                                             >  2:194958/1‑149 (MQ=255)
         aCCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGt                                                                                                                                             <  1:225469/149‑1 (MQ=255)
            ttATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGt                                                                                                                                          >  1:1062802/1‑149 (MQ=255)
            ttATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGt                                                                                                                                          >  3:1421991/1‑149 (MQ=255)
            ttATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGt                                                                                                                                          >  1:1163847/1‑149 (MQ=255)
              aTCACCCGGATAAGGGGTTGTCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTAt                                                                                                                                        <  1:112907/149‑1 (MQ=255)
                 aCCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAGCCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGaa                                                                                                                                     <  3:572920/149‑1 (MQ=255)
                 aCCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGaa                                                                                                                                     >  3:218811/1‑149 (MQ=255)
                      gATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCg                                                                                                                                              <  3:259832/135‑1 (MQ=255)
                          aGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTg                                                                                                                            >  2:1322234/1‑149 (MQ=255)
                          aGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTg                                                                                                                            <  1:1234139/149‑1 (MQ=255)
                           ggggTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGATGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTgg                                                                                                                           <  2:1123665/149‑1 (MQ=255)
                           ggggTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTgg                                                                                                                           <  1:1367612/149‑1 (MQ=255)
                             ggTTGCCGGATTGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGt                                                                                                                         >  3:1166530/1‑149 (MQ=255)
                                 gCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCaaa                                                                                                                     <  2:1478901/149‑1 (MQ=255)
                                 gCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCaaa                                                                                                                     <  2:1082821/149‑1 (MQ=255)
                                 gCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCaaa                                                                                                                     <  2:1126621/149‑1 (MQ=255)
                                  ccGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAAt                                                                                                                    <  3:958380/149‑1 (MQ=255)
                                    ggATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTc                                                                                                                  >  3:495758/1‑149 (MQ=255)
                                    ggATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTc                                                                                                                  <  4:395293/149‑1 (MQ=255)
                                    ggATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTc                                                                                                                  <  2:903478/149‑1 (MQ=255)
                                    ggATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTc                                                                                                                  >  4:1270177/1‑149 (MQ=255)
                                    ggATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTc                                                                                                                  >  3:1305031/1‑149 (MQ=255)
                                      aTCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCca                                                                                                                >  3:196632/1‑149 (MQ=255)
                                      aTCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCca                                                                                                                >  3:1370227/1‑149 (MQ=255)
                                          aCAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACaaa                                                                                                            >  4:75540/1‑149 (MQ=255)
                                          aCAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACaaa                                                                                                            <  3:1270177/149‑1 (MQ=255)
                                            aaTGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACa                                                                                                          >  2:1116321/1‑149 (MQ=255)
                                            aaTGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACa                                                                                                          >  1:491833/1‑149 (MQ=255)
                                              tGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCca                                                                                                                >  4:459143/1‑141 (MQ=255)
                                               gTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTgg                                                                                                                           <  4:135960/129‑1 (MQ=255)
                                                tCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTa                                                                                                      >  1:610080/1‑149 (MQ=255)
                                                  tttCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGt                                                                                                    >  2:503588/1‑149 (MQ=255)
                                                   ttCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACCTCTGGGTCAAATTCCACAAACAGGTAGtt                                                                                                   <  2:95742/149‑1 (MQ=255)
                                                    tCGGTTTATATACCGATAGCTGATGAATAACCGTCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTg                                                                                                  <  4:466598/149‑1 (MQ=255)
                                                           atataCCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACa                                                                                           >  1:76052/1‑149 (MQ=255)
                                                               aCCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATgg                                                                                       <  3:41538/149‑1 (MQ=255)
                                                                      gCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCactg                                                                                >  3:736717/1‑149 (MQ=255)
                                                                        tgatgaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAAt                                                                                         <  4:236885/138‑1 (MQ=255)
                                                                        tgatgaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCactgac                                                                              <  2:76052/149‑1 (MQ=255)
                                                                          atgaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTg                                                                                                                            >  4:1188686/1‑101 (MQ=255)
                                                                          atgaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCactgac                                                                              >  3:1192799/1‑147 (MQ=255)
                                                                            gaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCa                                                                          <  3:775502/149‑1 (MQ=255)
                                                                            gaATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCa                                                                          >  2:6242/1‑149 (MQ=255)
                                                                            gaATAACCGCCGATGCGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCa                                                                          >  4:1076486/1‑149 (MQ=255)
                                                                               tAACCGCCGATGGGACTATCGCTGGCTACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTa                                                                       <  2:399196/149‑1 (MQ=255)
                                                                               tAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTa                                                                       >  1:869561/1‑149 (MQ=255)
                                                                               tAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTa                                                                       >  4:1195263/1‑149 (MQ=255)
                                                                                aaCCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAGTCACTTCTGGGTCAAATTCCACAAACAgg                                                                                                        <  3:875031/115‑1 (MQ=255)
                                                                                aaCCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAgg                                                                                                        >  4:875031/1‑115 (MQ=255)
                                                                                    gccgATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGttt                                                                  >  3:666280/1‑149 (MQ=255)
                                                                                      cgATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTc                                                                <  2:315426/149‑1 (MQ=255)
                                                                                        aTGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACCGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCca                                                              >  1:473799/1‑149 (MQ=255)
                                                                                          gggACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑Tgatagtcccatcggcggttattcatcagctatcggtatataaaccgaaagacattgtcgatccggcaaccccttatccgggtgataaggt                                                            <  3:148833‑M2/149‑91 (MQ=255)
                                                                                            gACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑Tgatagtcccatcggcggttattcatcagctatcggtatataaaccgaaaga                                                                                                   <  2:256685‑M2/108‑52 (MQ=255)
                                                                                            gACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCcacgca                                                          >  2:1448996/1‑149 (MQ=255)
                                                                                             aCTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACATACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCcacgcac                                                         >  4:1235805/1‑149 (MQ=255)
                                                                                             aCTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCcacgcac                                                         >  4:735693/1‑149 (MQ=255)
                                                                                              cTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCcacgcacg                                                        >  2:1159524/1‑149 (MQ=255)
                                                                                               tATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTa                                                                                                      >  3:251076/1‑102 (MQ=255)
                                                                                               tATCGCTGGCGACACGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGa                                                       >  4:478827/1‑149 (MQ=255)
                                                                                                 tCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGAtt                                                     >  3:1007207/1‑149 (MQ=255)
                                                                                                    cTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATg                                                                                        >  4:1453635/1‑111 (MQ=255)
                                                                                                     tGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGAtttttt                                                 >  4:26355/1‑149 (MQ=255)
                                                                                                      ggCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTc                                                <  4:177411/149‑1 (MQ=255)
                                                                                                       gCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAg                                                                                                         >  2:479379/1‑91 (MQ=255)
                                                                                                         gACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCCAGCgatagtcccatcggcggttattcatcagctatcggtatataaaccgaaagacattgtcgatccggcaaccccttatccgggtgataaggtgattattaccgaag                                              <  1:932202‑M2/149‑105 (MQ=255)
                                                                                                          aCGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAgg                                            <  4:817595/149‑1 (MQ=255)
                                                                                                             cgcCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTg                                         <  1:315306/149‑1 (MQ=255)
                                                                                                              gcCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGa                                        <  3:753711/149‑1 (MQ=255)
                                                                                                              gcCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGa                                        <  3:1432717/149‑1 (MQ=255)
                                                                                                               ccAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGat                                       >  1:791041/1‑149 (MQ=255)
                                                                                                                cAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGatc                                      <  3:335849/149‑1 (MQ=255)
                                                                                                                 aaaGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGatca                                     >  2:841156/1‑149 (MQ=255)
                                                                                                                   aGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGatcatc                                   <  4:381286/149‑1 (MQ=255)
                                                                                                                    gcgcACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCg                                  <  2:1267861/149‑1 (MQ=255)
                                                                                                                      gcACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGt                                <  3:1203460/149‑1 (MQ=255)
                                                                                                                          gAAGTGGCTGACACCGCGGGTCGCGT‑TTATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCa                            <  2:541362/149‑1 (MQ=255)
                                                                                                                          gAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAg                                             <  2:1035343/132‑1 (MQ=255)
                                                                                                                           aaGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAg                           <  1:963042/149‑1 (MQ=255)
                                                                                                                           aaGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAg                           <  1:412173/149‑1 (MQ=255)
                                                                                                                                  tGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTc                    >  2:27888/1‑149 (MQ=255)
                                                                                                                                     cacCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTcaca                 <  3:1221318/149‑1 (MQ=255)
                                                                                                                                     cacCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTcaca                 >  3:76267/1‑149 (MQ=255)
                                                                                                                                     cacCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTcaca                 <  3:1381522/149‑1 (MQ=255)
                                                                                                                                       ccGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCaa                       >  4:258769/1‑141 (MQ=255)
                                                                                                                                        cgcgGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGcc              <  3:306562/149‑1 (MQ=255)
                                                                                                                                              tCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGCCTGTCtt        >  4:61029/1‑149 (MQ=255)
                                                                                                                                                gcgT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGCCTGTCTTTc      >  2:675271/1‑149 (MQ=255)
                                                                                                                                                 cgT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGCCTGTCTTTCg     >  1:1384/1‑149 (MQ=255)
                                                                                                                                                  gT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCa                                                                                   >  4:746760/1‑70 (MQ=255)
                                                                                                                                                  gT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGCCTGTCTTTCGa    >  3:110330/1‑149 (MQ=255)
                                                                                                                                                  gT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGCCTGTCTTTCGa    >  3:614504/1‑149 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
GTAATAATCACCTTATCACCCGGATAAGGGGTTGCCGGATCGACAATGTCTTTCGGTTTATATACCGATAGCTGATGAATAACCGCCGATGGGACTATCGCTGGCGACGCGCCAAAGCGCACGAAGTGGCTGACACCGCGGGTCGCGT‑TGATAGTCGTGGTATGAATCACTTCTGGGTCAAATTCCACAAACAGGTAGTTGGGGAACAATGGCTCACTGACTGCAGTACGTTTTCCACGCACGATTTTTTCCAGGGTGATCATCGGTGCCAGGCAATTCACAGCCTGTCTTTCGAGG  >  NC_000913/4024466‑4024762

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.