New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4543430 =	274 (1.060)	3 (0.010)	3/272	NT	1.3%	coding (316/549 nt)	fimA	major type 1 subunit fimbrin (pilin)
	?	NC_000913	4543484 =	217 (0.900)					coding (370/549 nt)	fimA	major type 1 subunit fimbrin (pilin)
Rejected: Frequency below/above cutoff threshold.

AGGGTGGGCATCCCTGCCCGTAATGACGTCCCTGAACCTGGGTAGGTTATTGATACTGAACCTTGAAGGTCGCATCCGCATTAGCAGCACCCGGGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAACGGAATGGTATTGGTTCCGTTATTCAGGGTTGTTTCTGAACTAAATGTCGCACCATCCAGCGTCAGCGCAGCACCCGTTCTGTCCAGGATCTGCACACCAACGTTTGTTGCGCTACCCGCAGCTGAACTCTGCAGAGCCAGAACGTTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4543709‑4543430 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacgttggtGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGGATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCTACCCAGGTTCAGGGACGTCATTACGGGCAGGGATGCCCACCCTTGTGCGATAAAAATAACGATGAAAAGGAAGAGATTATTTCTATTAG  >  NC_000913/4543484‑4543755                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGGGTGGGCATCCCTGCCCGTAATGACGTCCCTGAACCTGGGTAGGTTATTGATACTGAACCTTGAAGGTCGCATCCGCATTAGCAGCACCCGGGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAACGGAATGGTATTGGTTCCGTTATTCAGGGTTGTTTCTGAACTAAATGTCGCACCATCCAGCGTCAGCGCAGCACCTGTTCTGTCCAGGATCTGCACACCAACGTTTGTTGCGCTACCCGCAGCTGAACTCTGCAGAGCCAGAACG                                                                                                                                                                                                                                                                                       <  2:137816/275‑1       GGCATCCCTGCCCGTAATGACGTCCCTGAACCTGGGTAGGTTATTGATACTGAACCTTGAAGGTCGCATCCGCATTCGCAGCATCCGGAGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAACGGAATGGTATTGGCTCCGCTATTCCGGGTTGTTTCTGAACTAAATGTCGCAACATCCAGCGTCAGCGCAGCACCCGTTCTGTCCAGGCTCTGCACACCACCTCTTTTTGCACTACCCGCAGCTGACCTCTGCAGAGCCAGAACGTTGGT                                                                                                                                                                                                                                                                                  >  4:447633/1‑274                                                           AACCTTGAAGGTCGCATCCGCATTAGCAGGACCCGGGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAACGGAATGGTATTGGTTCCGTTATTCAGGGTTGTTTCTGAACTAAATGTCGCACCATCCAGCGTCAGCGCAGCACCTGTTCTGTCCAGGATCTGCACACCAACGTTTGTTGCGCTACCCGCAGCTAAACTCTGCAGAGCCAGAACG                                                                                                                                                                                                                                                                                       <  2:119287/217‑1                                                                                                                             CTGGAACGGAATGGTATTGGTTCCGTTATTCAGGGTTGTTTCTGAACTAAATGTCGCACCATCCAGCGTCAGCGCAGCACCCGTTCTGTCCAGGATCTGCACACCAACGTTTGTTGCGCTACCCGCAGCTGAACTCTGCAGAGCCAGAA                                                                                                                                                                                                                                                                                         <  6:638382/149‑1                                                                                                                             CTGGAACGGAATGGTATTGGTTCCGTTATTCAGGGTTGTTTCTGAACTAAATGTCGCACCATCCAGCGTCAGCGCAGCACCCGTTCTGTCCAGGATCTGCACACCAACGTTTGTTGCGCTACCCGCAGCTGAACTCTCGAGAGCCAGAt                                                                                                                                                                                                                                                                                         <  6:998253/149‑2                                                                                                                             CTGGAACGGAATGGTATTGGTTCCGTTATGCAGGGTTGTTTCTGAACTAAATGTCGCACCATCCAGCGTCAGCGCAGCACCCGTTCGGTCCAGGATCTGCACACCATCGTGTGTTGCGCTACCCGCAGCTGAACTCTGCAGAGCCAGAA                                                                                                                                                                                                                                                                                         <  8:366779/149‑1                                                                                                                              TGGAACGGAATGGTATTGGTTCCGTTATTCAGGGTTGTTTCTGAACTAAATGTCGCACCATCCAGCGTCAGCGCAGCACCCGTTCTGTCCAGGATCTGCACACCAACGTTTGTTGCGCTACCCGCAGCTGAACTCTGCAGAGCCAGAAC                                                                                                                                                                                                                                                                                        >  8:806030/1‑149                                                                                                                                 AACGGAATGGTATTGGTTCCGTTATTCAGGGTTGTTTCTGAACTAAATGTCGCACCATCCAGCGTCAGCGCAGCACCCGTTCTGTCCAGGATCTGCACACCAACGTTTGTTGCGCTACCCGCAGCTGAACTCTGCAGAGCCAGAACGTT                                                                                                                                                                                                                                                                                     <  5:639893/149‑1                                                                                                                                 AACGGAATGGTATTGGTTCCGTTATTCAGGGTTGTTTCTGAACTAAATGTCGCACCATCCAGCGTCAGCGCAGCACCCGTTCTGTCCAGGATCTGCACACCAACGTTTGTTGCGCTACCCGCAGCTGAACTCTGCAGAGCCAGAACGTT                                                                                                                                                                                                                                                                                     <  5:808977/149‑1                                                                                                                                 AACGGAATGGTATTGGTTCCGTTATTCAGGGTTGTTTCTGAACTAAATGTCGCACCATCCAGCGTCAGCGCAGCACCCGTTCTGTCCAGGATCTGCACACCAACGTTTGTTGCGCTACCCGCAGCTGAACTCTGCAGAGCCAGAACGTT                                                                                                                                                                                                                                                                                     <  8:1211612/149‑1                                                                                                                                 AACGGAATGGTATTGGTTCCGTTATTCAGGGTTGTTTCTGAACTAAATGTCGCACCATCCAGCGTCAGCGCAGCACCCGTTCTGTCCAGGATCTGCACACCAACGTTTGTTGCGCTACCCGCAGCTGAACTCTGCAGAGCCAGAACGTT                                                                                                                                                                                                                                                                                     <  6:1609919/149‑1                                                                                                                                  ACGGAATGGTATTGGTTCCGTTATTCAGGGTTGTTTCTGAACTAAATGTCGCACCATCCAGCGTCAGCGCAGCACCCGTTCTGTCCAGGATCTGCACACCAACGTTTGTTGCGCTACCCGCAGCTGAACTCTGCAGAGCCAGAACGTTG                                                                                                                                                                                                                                                                                    <  5:974266/149‑1                                                                                                                                  ACGGAATGGTATTGGTTCCGTTATTCAGGGTTGTTTCTGAACTAAATGTCGCACCATCCAGCGTCAGCGCAGCACCCGTTCTGTCCAGGATCTGCACACCAACGTTTGTTGCGCTACCCGCAGCTGAACTCTGCAGAGCCAGAACGTTG                                                                                                                                                                                                                                                                                    <  8:1295795/149‑1                                                                                                                                  ACGGAATGGTATTGGTTCCGTTATTCAGGGTTGTTTCTGAACTAAATGTCGCACCATCCAGCGTCAGCGCAGCACCCGTTCTGTCCAGGATCTGCACACCAACGTTTGTTGCGCTACCCGCAGCTGAACTCTGCAGAGCCAGAACGTTG                                                                                                                                                                                                                                                                                    <  7:534211/149‑1                                                                                                                                   CGGAATGGTATTGGTTCCGTTATTCAGGGTTGTTTCTGAACTAAATGTCGCACCATCCAGCGTCAGCGCAGCACCCGTTCTGTCCAGGATCTGCACACCAACGTTTGTTGCGCTACCCGCAGCTGAACTCTGCAGAGCCAGAACGTTGG                                                                                                                                                                                                                                                                                   >  7:191151/1‑149                                                                                                                                    GGAATGGTATTGGTTCCGTTATTCAGGGTTGTTTCTGAACTAAATGTCGCACCATCCAGCGTCAGCGCAGCACCCGTTCTGTCCAGGATCTGCACACCAACGTTTGTTGCGCTACCCGCAGCTGAACTCTGCAGAGCCAGAACGTTGGT                                                                                                                                                                                                                                                                                  <  8:1307459/149‑1                                                                                                                                                    CGTTATTCAGGGTTGTTTCTGAACTAAATGTCGCACCATCCAGCGTCAGCGCAGCACCCGTTCTGTCCAGGATCTGCACACCAACGTTTGTTGCGCTACCCGCAGCTGAACTCTGCAGAGCCAGAACGTTG                                                                                                                                                                                                                                                                                    <  6:1267454/131‑1                                                                                                                                                    CGTTATTCAGGGTTGTTTCTGAACTAAATGTCGCACCATCCAGCGTCAGCGCAGCACCCGTTCTGTCCAGGATCTGCACACCAACGTTTGTTGCGCTACCCGCAGCTGAACTCTGCAGAGCCAGAACGTTG                                                                                                                                                                                                                                                                                    >  5:1267454/1‑131                                                                                                                                                                                         ATCCAGCGTCAGCGCAGCACCCGTTCTGTCCAGGATCTGCACACCAACGTTTGTTGCGCTACCCGCAGCTGAACTCTGCAGAGCCAGAACGTTGGT                                                                                                                                                                                                                                                                                  >  8:195403/1‑96                                                                                                                                                                                         ATCCAGCGTCAGCGCAGCACCCGTTCTGTCCAGGATCTGCACACCAACGTTTGTTGCGCTACCCGCAGCTGAACTCTGCAGAGCCAGAACGTTGGT                                                                                                                                                                                                                                                                                  <  7:195403/96‑1                                                                                                                                                                                                                               GCACACCAACGTTTGTTGCGCTACCCGCAGCTGAACTCTGCAGAGCCAGAACGT                                                                                                                                                                                                                                                                                      >  2:41534/1‑54                                                                                                                                                                                                                                 ACACTAACGTTTGTTGCGCTACCCGCAGCTGAACTCTGCAGAGCCAGAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGGATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATT                                                                                                                                                                                     >  6:216111/1‑149                                                                                                                                                                                                                                   ACCAACGTTTGTTGCGCTACCCGCAGCTGAACTCTGCAGAGCCAGAACGTTGGT                                                                                                                                                                                                                                                                                  <  4:41534/54‑1                                                                                                                                                                                                                                    CCAACGTTTGTTGCGCTACCCGCAGCTGAACTCTGCAGAGCCAGAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGGATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATA                                                                                                                                                                                          <  6:1607281/141‑1                                                                                                                                                                                                                                    CCAACGTTTGTTGCGCTACCCGCAGCTGAACTCTGCAGAGCCAGAACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGGATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATA                                                                                                                                                                                          >  5:1607281/1‑141                                                                                                                                                                                                                                                                                AACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGGATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGC                                                                                                                                      <  6:129064/149‑1                                                                                                                                                                                                                                                                                 ACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGGATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCT                                                                                                                                     <  7:946379/149‑1                                                                                                                                                                                                                                                                                 ACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGGATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTT                                                                                                                                                                <  7:349956/122‑1                                                                                                                                                                                                                                                                                 ACGTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGGATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTT                                                                                                                                                                >  8:349956/1‑122                                                                                                                                                                                                                                                                                   GTTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGGATGGTGCGACATTTAGTTCAGAAACAACCCGGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGC                                                                                                                                   <  6:1484125/149‑1                                                                                                                                                                                                                                                                                    TTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGGATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGT                                                                                                                                                                                 <  7:37/102‑1                                                                                                                                                                                                                                                                                    TTGGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGGATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGT                                                                                                                                                                                 >  8:37/1‑102                                                                                                                                                                                                                                                                                      GGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGGATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGTTGCTAATGCGGAGGCGACCTCCAAGGTTCAGTACCAATACCCTACCCAGTTTCAGGGAGGTCTTTACGGGCAGGGTTGCCAACCCTGGTGCGATAAAAATACCGATGAAAAGGAAGAGATTATTTCTATTAG  >  2:704536/1‑275                                                                                                                                                                                                                                                                                      GGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGGATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGG                                                                                                            >  4:6509/1‑169                                                                                                                                                                                                                                                                                      GGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGGATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAA                                                                                                                                <  7:1316322/149‑1                                                                                                                                                                                                                                                                                      GGTGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGGATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAA                                                                                                                                <  5:1581671/149‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGGGTGGGCATCCCTGCCCGTAATGACGTCCCTGAACCTGGGTAGGTTATTGATACTGAACCTTGAAGGTCGCATCCGCATTAGCAGCACCCGGGGTTGCGGCCCCGGTTGCAAAATAACGCGCCTGGAACGGAATGGTATTGGTTCCGTTATTCAGGGTTGTTTCTGAACTAAATGTCGCACCATCCAGCGTCAGCGCAGCACCCGTTCTGTCCAGGATCTGCACACCAACGTTTGTTGCGCTACCCGCAGCTGAACTCTGCAGAGCCAGAACGTTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4543709‑4543430 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacgttggtGTGCAGATCCTGGACAGAACGGGTGCTGCGCTGACGCTGGATGGTGCGACATTTAGTTCAGAAACAACCCTGAATAACGGAACCAATACCATTCCGTTCCAGGCGCGTTATTTTGCAACCGGGGCCGCAACCCCGGGTGCTGCTAATGCGGATGCGACCTTCAAGGTTCAGTATCAATAACCTACCCAGGTTCAGGGACGTCATTACGGGCAGGGATGCCCACCCTTGTGCGATAAAAATAACGATGAAAAGGAAGAGATTATTTCTATTAG  >  NC_000913/4543484‑4543755

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.